RnoINT0169483 @ rn6
Intron Retention
Gene
ENSRNOG00000042213 | Zscan25
Description
zinc finger and SCAN domain containing 25 [Source:RGD Symbol;Acc:1308619]
Coordinates
chr12:11779779-11783232:-
Coord C1 exon
chr12:11782804-11783232
Coord A exon
chr12:11779981-11782803
Coord C2 exon
chr12:11779779-11779980
Length
2823 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
ATGGGATTCATTCTTCTTAGGTT
3' ss Score
6.07
Exon sequences
Seq C1 exon
ACGGGTCACCCCTGTTGTTGTCCTCAGTCGTGCTGGAGCTTGAAGATGCTGAAAGAGCGTCTGGAGATGGCCGAAGATCCTCAGCAGCAGATGGGTGCTCCAGTGGTCAAACTGGAGAAGGAGCTGCCATGGGGCAGGGGAGGGGAGGACTCTAGTCCTGAGGCTTTTCGGCTAAGGTTTCGGCAGTTCCGCTACCAAGAGGCTGCTGGTCCCCAGGAAGCCCTCAGGGAGCTCCAAGAGCTGTGTCGACGGTGGCTGAGGCCTGAGCTGCACACCAAAGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACCATCCTGCCCCGAGAGCTCTACACCTGGATCCGGGAACACAGCCCAGACAGTGGCAAGGCTCTGGTGGCCATGGTGGAGGAGCTGATGGGGAGCACGGAGGCCAAGGCG
Seq A exon
GTGGGTGAGAAGAGGGTGTCCAGGCCTTTCTCGGTTGGTGTGGGAATCATAGTTGAAGAGGTTAAGGAAGTGGTGGGAATAGATGAGGCATGGGACCTGCTCCATTGTCCCCCAGTCCCCAGAGGGCCTTTCCTGGGAAGTGGCTGCATTTCCCAAGAAGATTCAGGGGTTGAGGAGATGGTTCAGTGGGTGAGCATTTGCCATGCGAGCCTGAGGCCCGGAGATTAGATCTCCAGGACCTATAGAGAGGGTACGTGAGATAGCGTGCAGGTGGACTGGCGGTGGAGAAAGGAGAGCCCCCGGAAACTTGCAGGCCAGGGAGCTGGGCGTGCTCAGCAAGAGTGTGTACCGTCAGGTGGAAGGTGAGAGCCAACACTGGAAGTTGTCTTCCAATCTCACATGCTGGGTGCCACATGTGTCTGTACTCACAGGCACATGCATGTGCACGAACACACTCCCTCACACACATCATATCCACAAGCTGTTAAACAAAAGAAAGCCATCTAGGAAAGATGTCCACGGGCAGAAGAGCCCAATGCGGTGGTTTGGGCATCAGGGACTCCTGGTGAGCAGCAAGTCCAATGGAAGCAGTTGCGATCATTTTCCAGGTCCACTGTAAACTCTGCAGGCCCTTGGGCAGAGGCTAATGTGTGAGCGCTTCTGCCAGAGGCGACTGGGATTCAGGCATAACCCCAGACTGCCTGTCACTCTGGGACTCCTTACTTACCCTTAGGGACCTCCACTTTGGCAAAATCAGAAAGGAGTTGAGGAGGACCAGAGTGGGATGTGTTAAAGACATTTATAGGGTTGGGGAGCTGGTGCAGTGATGAAAGAGATGACCACTGGAGTTTGGTTTCCTAGCCTCCATGTACACACTGGTGTGTGTGGTGAACCTGTAGTCCCAGCACTCGGGAGGTGGAGCTGGCTGCATAGCCTGATGAAGTCAGCAAGCAGGAAATGACGCGACAGGCCTTGCCTGAATATATGGGGTGCAGATTGATAGGGAAAGGCAGAGTTCACCCTCTGTGCACAACATGTTCATACATGCGCACTCACACTGACATGAACATGCATTCTGCATGCATAAGTACCACACACACGTACAAAAAAAGGCATTCTAAATAATTTTTTTTTTTAAGCTAGACAGTGGTGGCACATGCCTTTATTCTCAGCACTCAGGAGGCAAAGGCAGACAGATCTCTTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCTGGGACAGCCAGGGCTACACAGAGAAATCTTGTCTCTAACAAAGAAAAAAAATCTTTAATTTTTTAAAAAATTTTCTGTGTATGGGTGTTTAGCCTGTATGAGGTCTGTGCATCATGTTTATACAGTGCCTCTGGAGTCCAGATCCCTTGGAACTGGAGTTATAGGTAGTTATTAACTGCCATCTGGGTGCTGGGAATTGAACCAGGGTCCTTTGAAAGAGCAACCACTGAACTCTCTCTCTAGCTCTTAAATACATATCTTTCTTTGTTTGCTGTTTTTTGAGCACAGTTTCTTTGTGTAGCCAGGGCTGTTCTGGAAGTTACTCTGTAGACCAGGTTAGCCTCAAACTCAGAGTCTCTGCCTTCTGAGTGCTGGGATTAAACCTGGCTTAAATAAGTATCTAAGGCCAGGGGTTGGGGCCAGGGCACAGAGTGGGTCGGGGGAAGAGGAGAGGTTTGGGCTCACATTAGGGCTCATAGTTTGTTGGGGAAGTGTGGTGTCAGGGGATGAGACAGTTGGCCACACTACATCCACCTTCAAGAAGTAGTGATGAACGCTGGTGCTCAGCTCACTTTCACCTTTTTGTTTTAAAGATTATAACCTTTTGATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAACACATACAGATATATTCGGATGTCCACAGAGGCTTGGGACTAGAGCTATGTGTAGTGGTTGTGAGCCAGACTTAGGTCTTCTGCACAAAGGGTAGCTGCTGAGCCCTCTCCCCAGTCCCTCCCTCCCTTTATTCAGTGTAGGATCTCAGCTCATTGGATGGAGCCGTCCACATTTAGGGTGGGTCCTCCCATTTCAGTTAGCCAGATGTAGACACACATTCCCTAGAGGTTTGTTTCCTAGGTGATTCTAGATCCTGTCAAGTTGCCTTTTTCTATGAGACTGGCTGCAAACTCCCCCGGTTTCTCAATAGCTAGTTCACTCTGGCGTTTGTGGCTTTTATTTTGGGCGTCTATAACTGTGAAGTTGATTTCCAACAGTGAGTCTTGTGCCTAGAGTTCTCAGCAGGACCTGCTCACTGGACCTGGAGATGCCAAGGCAGGTAGAGGGTATGGTTGTCTATGACATGGTACAGGAGTTGCTCAGGGCCTTGCAAAGGGAGATCTTAGCTTTCTCCCTGTGGAAGAGGTCAGCAACTTTTCCTTCTTCCACCATATGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGACAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTTTCTATCCTGTTTTTGGAGATGGGGTCTACTATTGTAGTCCTGGCTGGCCTGGCAGGCTAGTCTTGAACTCCGAAAGATCCTCCTACCTCTACTGATTGCTAGGATTATAGGCTTGGACCACCACGGTGGGGTTCTGTGGCACTGGGATGGAACCTCGGGCTCCAGGGCTTCATACATGCTAGGCTAGAACTCTACCAGCTGAGTCCCACTCCCAGCCTTGCTTTCTTTTTCAGCTTTAATTCAACTCTCTTTTTAACAGCCTCCAGCAGGTCTCCTTCTAATTGGTATGGGATTCATTCTTCTTAG
Seq C2 exon
GTTCCATGCCATGCCCAGGGAGAACAGCTGGTCACAGCCCTGGGCGGAGGATCTTGGCAATCAGGTATCCACTTGGGGCCAGTAGAAGTCAAGCCTGAGTGGGGGATCCCTCAGGGTGAAGGAGTTCAGAGCTTAGGCCCAAGCACCGCAGAACAGCTGAGCCAGGGCCCTGGAGATGGGACACAGGCCTTCCAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042213:ENSRNOT00000039687:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.476
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.8=71.9)
A:
NA
C2:
PF0202312=SCAN=PD(1.1=1.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]