HsaINT0187420 @ hg19
Intron Retention
Gene
ENSG00000197037 | ZNF498
Description
zinc finger protein 498 [Source:HGNC Symbol;Acc:21961]
Coordinates
chr7:99217184-99219197:+
Coord C1 exon
chr7:99217184-99217616
Coord A exon
chr7:99217617-99218995
Coord C2 exon
chr7:99218996-99219197
Length
1379 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
GTGTTGGGAACTGTTCTTAGGTT
3' ss Score
5.54
Exon sequences
Seq C1 exon
GGTCATTGATGCAGTCATTCTCAGTCTCCTCGGAGGGAGTCTGAAGATGCTTAAAGAGCATCCAGAGATGGCGGAAGCTCCTCAGCAGCAGTTGGGTATTCCTGTGGTGAAACTGGAGAAAGAGTTGCCATGGGGCAGAGGAAGGGAGGACCCTAGTCCAGAGACTTTTCGGCTGAGGTTTCGGCAGTTCCGCTACCAGGAGGCAGCTGGACCCCAGGAAGCTCTTAGGGAGCTCCAGGAGCTCTGTCGTCGGTGGCTGAGGCCCGAGTTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACTATCCTGCCCCGCGAGTTCTACGCCTGGATCCGGGAGCATGGCCCAGAGAGTGGCAAGGCCCTGGCCGCCATGGTGGAGGACCTGACAGAAAGAGCACTGGAGGCCAAGGCG
Seq A exon
GTGGGTGAGGAGGGGATCCAGGTCTGGCGCCCTTGGCGTGGGCAGGGAATGTTAAAGAATCCAAAGATTTGAGGAAGCAGTAGGAGTGGACGAGGTGTGGAGCCGCCCTCCTCTGCCCTCAGACTCCCTGAGGTTCTTTTTGGAGAGCAGTGGCGTTTTCAGCAAGAAAGGCCATTCCCAGGGGAGATGCTGCCATGCAGAAGGGCCTGAAGCCTCTGTTTGGTCATGAGGGCAGAGGCCTGGCCATATTTCCCTTGTGGGCATCAGGCAAAAAGAAGGCAGTTGTGATTGTTTTTGGGGTCCCTCATAGACCTGACCCTGCTTTGGACAGAGATGCCTCTGGGAAGGCAGAGAATCCCACCTGGGGAATATTTTTCCGGAAAAGGGTTGTCCATGGCAGTACTGTTTCTCTGTGGCTCATAGGGCTCCTGTAACAATTCTCTGGTGCTGCTCTAATGACACCAAGTGATTTGGCACCGCACGTGCTTCCTTGAGGTTCCAGCCATATTTCGGTCACTTTGTGGTACAGCCCCCTGATGGATGACTGGGAAAGGAGAGCAGGACTGATGACACCGTCTTGCTCACAAGCCCCCGTCCTTCTGTAGTTCAGCCTCCCGTGCACACTCTCGTCACCCTGACTTCCTGTCTTCAGAATCCTAAGAGAATTTTTTCCTACTCAACTCAGGAGCTTAAAAGTGGACCCAGAAATGCCTTGTTTTTGTGAGTACTTCTCAGTGAGAGAGTCCTCCTGATTTTTCTTGCTCTTTTTAATTTATTATTTTTGAGACAGGGTCAGTCAACAGCCTAGGCTGGAGTGCAGTGGCACAATCCTAGCTTACTGCAGCCTTGAGCTCCTGGCTCAGTTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGAGACCACAGGCATGCATGCCTGGCTAATTTTTTTATTTTTTGTAGAGATGGAGTCTCGCCATGTTGCCCAGGCTTCCTGGCTCTCTTTAAAGCAACTATTTCTCACTGGCCTGTTCACTGCAGGGTCTAGGCTTTGCATTTTTTATTTTCAGCTTTTTCAATTAGGAATTTTTTTTTCTAGTAGTGAGTATATTGTGTTAAAATCCTCAGCAGGATAATATTTGGGCTTGGTGATGGCAGGTAGAGGGGACCCTTGTCAAATGGCGTGGACAGATAAAAGTTGCTCAGGGCCTGATGCATGAGTTTAGCTTCCTTTTCACTTCCTCACTAATGTCCTGGGGAAGAGCTCAGCTGATTTTTCCTTCCTCTCCCCTGAAGCTGGAATGGTTCTTTTCTTGGTTCTCTTTTTAGATTTTAGTTCAACTCCCTTCATAACAGCCTTGCCCAGGCCTCATTCTAATCGGTGTTGGGAACTGTTCTTAG
Seq C2 exon
GTTCCATGCCACAGGCAGGGAGAGCAGGAGGAAACAGCACTTTGCAGAGGCGCTTGGGAGCCAGGCATCCAGCTGGGGCCAGTGGAGGTCAAGCCTGAATGGGGGATGCCCCCTGGGGAAGGAGTTCAAGGTCCAGACCCAGGTACCGAGGAGCAGCTCAGTCAGGACCCTGGAGATGAGACACGGGCCTTCCAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197037-ZNF498:NM_145115:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.858
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAAGAGTTGCCATGGGG
R:
CTGTTTCCTCCTGCTCTCCCT
Band lengths:
356-1735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)