MmuINT0179336 @ mm9
Intron Retention
Gene
ENSMUSG00000070420 | Zfp498
Description
zinc finger protein 498 [Source:MGI Symbol;Acc:MGI:3647079]
Coordinates
chr5:146044212-146047378:+
Coord C1 exon
chr5:146044212-146044649
Coord A exon
chr5:146044650-146047176
Coord C2 exon
chr5:146047177-146047378
Length
2527 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
GGTATGGGGATTCTCCTTAGGTT
3' ss Score
4.26
Exon sequences
Seq C1 exon
TCTTCTCAGACGGGTCACCCTTGTTGTCATCCTCAGCCTTGCCGGAGCTTGAAGATGCTGAAAGAGCGTCTGGAGATGGCAGGAGATCCTCAGCAGCAGATGGGTGCTCCAGTGGTCAAACTGGAGAAGGAGCTGCCATGGGGCAGGGGAGGGGAGGACTCGAGTCCCGAGGCATTTCGGTTGAGGTTTCGGCAGTTCCGCTACCAAGAGGCTGCTGGTCCCCAGGAAGCCCTCAGGGAGCTCCAAGAGCTCTGTCGCCGGTGGCTGAGGCCGGAGCTGCACACCAAAGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACCATCCTGCCCCGAGAGTTCTACACCTGGATCCGGGAACACAGCCCAGACAGCGGCAAGGCTCTGGTGGCCATGGTGGAGGAGCTGATGGGGAGCACGGAGGCCAAGGCG
Seq A exon
GTGGGTGAGAAGAGGGTGTCCAGGCCTTCCTCGGTTGGTGTGGGAATCAGAGATGAAGAGGTTAAGAAAGTGGTGGGAATAGATGAGACATGGGACCTCCTCCATTGTCCCCCAGTTCCCAGAGGTCCTTTCCTGGAGAGTAGCTGCATTTTAGCAAGAAGATTCAGGAGTTGAGGAGAGGCTCAGTGGGTAAGCACTTCCTGTACAAGCATGAGGCTTTGGGATTAAATCTCCAGGACCTATAGACAGGGCACATAAGGTAGTATGCACGTGTGGTCCCAGCAGTGAGACCAGCGGCAGAGAGAGGAGAGCCCTGGAAACTTGCCGGCCAGGGAGCCAGGCATACTCAGCAGTGTGGTCACCATAAGGTGGAAGATGAGAACCAACACTGGAAGTTGTCCTCTGACTTCCTCACATGCTCAGTGGCACATGTACTCACATGTACTCACATGTACTCACATGCACACACACCTGCATAAACACACACTCTCACACCCACCATATACACACTTAAGTTAAAGAAAGCCATCTCTAGGAACGATGTCTCTGGGCAGCAAAGCCTGATACTGTGGTTTGGGCATCGGGGACCTGGAGTGCGCTGCAAATCCAGTGAAGGCAGTCGTGCTTGTCTCCAGGCCCCCTATAAGCGCTGCAGGCTCTTGGGGAAGAGGCTAAAAATGCGTGCTTCTGCCAGAGGCTGCTGGGAGTCAGGCGCAACCAGGCTGTTCCTTACTTACCCTTAGGGACCTCCACTTAGGCAGAAGCAGTTTGTGGCTTCAGCGGTTGCAGAAAGGAGTTGAGGAGCAGAGTGGGGTGTATCAAAGACATGTATTTTTAGGGCTGGGGAGCTAGTTCAGTGGGTGAGACGCATGAGAACTAGAGTTTGGTTTCCCAGTCCCCGTGTAAACACCGGGTGGGGGTGGGTGCGTGGTCCACCTGTAATCCCAGCACTCCGGAAGCTGAGTTGGCATCCGCTGAGGGAGCTGCCTAGACAGCTGGGTGAAGTCAGCCAGTTAGAAATGCCAGGACAGGCCTTGCCTAAATATACAAGGTGCAGACCAATAGGGAACACACTGGCTTCACACATTGTGCGCGACATGTGCATGCATGTGCACCCACGCGGATGTGAACATGCATGCAGCATGCATAGGTAGTGCATACATGCGCACATACAAAAAAAGACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCACCCTGGTCTACACAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAAACAACAAACAAACAGACATTCTAATTTTTTTTTAAAGCTACAAAATGGTGGCGCACGCCTTTAATCTCAGCGCTTAGGAGTTTGTAAAGGCAGACTGATCTCTGAGTTAGAGGCCAGCATGGTCTACAGACTGAGTTTTGGAACAGCCAGGACTACACAGACAAGATTTGTCTCTTAACAAAGAAAAAAAAATCTTTTTAATTTCTTAAAAAATGATGTGTATGGGTGTTTTGCCTGTATGTAGATCTGTGTAGTATGTGTATACAGTGCCTCTGGAGTCCAGAGCCCCTGGAACTGGAGTTATAGGTAGTTATTAACTGCCATCTGGGTGCTGGGAATTGAGCCAGGGACCTCTGAAAGAGCAACCAGTGCTCTTAACACTGAGCTATCTCTTTAGCCCTTAAATATGAAACTGGCAGCAAAATCCCACTTTCTGTGGAGCAGCTATTTCTCATTAGCTAGTTCATTTTGGGGTTTGCGGCTTTTACTTTGGGCTTCTGTAACTGAAGGTGCTTTCCAGCAGTGAGTTGCTAAAGAACCCTGGGATACTGTTCACTGGACTTGGAGATGTTGAGGCTGGTGGAGGGATGGTTGTCCCATGGCATGGACTGGTACAAAAGTTGCTCAGGGCCTTGTAAAGGGAGAGCTTAATGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCTCTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATAGGATCTAACGCCCTCTTCTGGTGTGTCTGAAGACTGCTACCGTGTACTCATATATATAAAATAAATACATCTTAAAAAAAAAAAGAGAGAGAGCAAGCTTAGCTTTTCCTTCTTCTCTCCTCCCTCCCTTTCTCTCCCTGTCTTCCTTTTTCTATCCTTTTTTTGGAAAGGGGATCTACTATTGTAGTCCTGCTTGGACAGTAGCTCACTAATTAGGCCAGGCTGGTTTTGAACTCCGAAAGATCCTGCTGCCCCTACTGGGTGCTAGGATTACAGGCTTGGACCACCACACTGGGTTTACGTGGCACTGGGCTGGAACCCAGGGCTCCAGGGCTTCATGCATGCTAGGCAAGCGCTCTACCAACTGAGTCCCACCCCCAGCCTTGCTTTCTTTTCAGTTTTCATTCAGCTCTCTTTTTAATAGCCTCCAGCAGGTCTCATTCTAATTGGTATGGGGATTCTCCTTAG
Seq C2 exon
GTTCCATGCCATGCCCAGGGAGAGCAGCTGGTCACAGCCCTTGGCGGAGCATCGTGGCAATCAGGCATCCACCTGGGGCCGGTAGAAGTCAAACCTGAGTGGGGGATACCCCAGGGGGAAGGAGTTCAGAGCCTAGGCCCAAGCACCACAGAACAGCTGAGCCAGGGCCCTGGAGATGGGACACAGGCCTTCCAGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070420-Zfp498:NM_001081431:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.529
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.8=71.9)
A:
NA
C2:
PF0202312=SCAN=PD(1.1=1.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: