BtaINT0166406 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039512 | ZSCAN25
Description
zinc finger and SCAN domain containing 25 [Source:HGNC Symbol;Acc:HGNC:21961]
Coordinates
chr25:37347725-37349581:-
Coord C1 exon
chr25:37349168-37349581
Coord A exon
chr25:37347927-37349167
Coord C2 exon
chr25:37347725-37347926
Length
1241 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
GTGTTGGGGACTCTTCTTAGGTT
3' ss Score
5.88
Exon sequences
Seq C1 exon
TTCAGTCTTTTGGGAGGTGGTGTGAAGATGCTTGTAGAGCGTCCAGGGATGGCAGAAGAGCCTCAGCAGCAAATGGGTGGCCATGTGGTAAAACTAGAGAAAGAGCTGCCGTGGGGCAGGACGAGGGAGGACCCCAGCCCGGAGACTTTTCGCCTGCGGTTTCGGCAGTTCCGCTACCAGGAGGCGGCCGGGCCTCAGGAAGCCCTCAGGGAGCTCCAGGAGCTCTGTCGCCAGTGGCTGCGGCCCGAGCTGCATACCAAGGAGCAGATCCTGGAGCTGCTAGTGCTGGAGCAGTTCCTGACCATCCTGCCACGGGAGTTCTACGCCTGGATTTGGGAGCACGGCCCCGAGAGCGGCAAGGCCCTAGTGGCCATGGTGGAGGACTTCACGCAGAGAGCCCTGGAAGCCAAGGCG
Seq A exon
GTGGGTGAGAAGGGGGTTCTGGGTCATGCTTTGTTGATTGGAACGGAAGCGGTAAAGAATCTAGAGGTTTGATGAAGCAGTGGGAGTGGGTGATGTGCATGCAGAGTCTCCTTTCTCTGCTTCCGGGCCACTAGAAGTACTTTTTGGAGGGTAGAGGAGTTTTCAGCAAGGAAAGCCATTTCCACGGAAGACGCAGGGCCAGTGGAAGGGCTGGTGGCTGCTTTTCTGGTCATCAGGGCAGGGCCTTGGCCATATTTCCTTTGTGAGCCTTGCGTCCAGGAAGGCAGTGGTGGACCTCCCAGTGGTTAGCACTGGCTTCTAATGCAGGGGGCACTGGATTCAAGCCCTGGTTAGGGAGCTAAGATCCCACATGCTGTGTGGTATGGTCAAAAATGAAAGAAAAGGAAGGCAGTTAGGATGGATTTCAAAGGCCCAGGGGTCTCCTTCCTCTTTGGGTGGAGACGTATGTGGGCTTGCAGGGAATTCTTCTTGGTGAACAGTTTTTCTCAGGAGCGCTGTCTGTAGCAGTGCCATTTCCACATTTGGGATGTTGGCTCAGATGATCACATAATGAGTGACTTGCACCTCAGGGGCTTCCCTGGGACTCTGGTCATGTCTCTGTCCCTCTCTGGTACAGTTTCCTGCTGGCTGTCTAGGAAAGAGAGGACAGGACCGAACATTACTGTTTTGCTTGCAGGTAACAACCTTCCTTCAGTTTATCCTCCCCTTTCCCACAGCAGTCACCCTGACTTCTTGTGTTGTCTAAGAAAGTTGTTTTGTTTTGTCTTTAGTAGGAGCTTAAAAGTGGACCAGGAAGGGCCTGTTTTTGTGGGTTTTGGTTTTCCTTGCTATTTGTAGAACAATTTTTTTCCTCACTAATTCACTGTACACTTTAGGCCTTATATTTTTTGTTTTCAGCATCTTTAACTGAGGAATGTTTTTTCCTAATGCGTGTTTTGGGCTAAAGTTCTCAATGAAATGATACTATCTCTCTATGATGTTGTTCATGGTGGAATGTGATCAATACTGAGGTGAGCTGAAGGGACTCCTGTCAAATGGCATGGATACAGACAAGTATCTGATCTCAGAGCCTGATGAAGGCAGTTTAGCTTCCTTTTCACCTTTTCACTGCTGTGCTCAGGAAGAGCTGAGCCAGCTTGTCCATGCCCCAGCAGCTGGAATGGCTTTCATGACAGCCTTACACAGGCCTCGTTCTAACAGGTGTTGGGGACTCTTCTTAG
Seq C2 exon
GTTCCGTGCCACGTGCAGGGACAGCGGGAGGAGACAACGCTTTGCAGAGACCCCTGGGAACCAAGTGTCCACCTGGGGCCCGTGGAGGTCAAGCCCGAGTGGGGGATGCCCCATGGGGAAGGCATCCAAGACCTTGACCGAGGCACTGAGGAGCAGCTCAGCCAGGACCCTGGAGAGGGGATGCAGGCCTTCCAGGAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039512:ENSBTAT00000061261:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=NA C2=0.735
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTTTCGCCTGCGGTTTC
R:
AGGTGGACACTTGGTTCCCAG
Band lengths:
346-1587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]