Special

RnoEX0000284 @ rn6

Exon Skipping

Gene
NA
Description
NA
Coordinates
chr13:100890331-100909413:+
Coord C1 exon
chr13:100890331-100890465
Coord A exon
chr13:100896146-100896226
Coord C2 exon
chr13:100909201-100909413
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCCCATACCTCATAGATG
3' ss Score
7.63
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ATGGAAGTCTCCGCCAGGAGATCACTTTTCTTTTGAGTCAGCAGGACCTTGATGACACCTACCTCTCCAGCCAGCTGAGCAAACAGCCTTCTGAATCCATCTCCAATGTCCTCCTCATTGGCTTCAATCTAGAAG
Seq A exon
ATGCCGAAGCCAATGGTGTGCATGTCCTCACCCATCTTCCTCTGCCGCCGCCGATGCTTCTGGATGAGGCCCACCAGGAAG
Seq C2 exon
ATAGGTTGGTGCCTCTTTCAGATTCGCCCAACTCAGAGCAGTGTTGGGAGACCCGGATCTTCGAGATGTGACCTGAGACTCTGCAGAGCGCTCACGCCACCTGTAAGCCCCAAGAGCAGTAGACGGTTTCTCGCCAAGACACCTGCGCTACAACTGTATCAACCATGGCCTCTTCCCTCAGCCCCACCCATTTCTGACTTATCCCCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
Rn.157616_MULTIEX1-1/4=C1-C2
Average complexity
ME(1-4[97=100])
Mappability confidence:
100%=100=100%
Protein Impact

NA

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGACCTTGATGACACC
R:
TCACATCTCGAAGATCCGGGT
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]