RnoEX0000285 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr13:100890331-100909413:+
Coord C1 exon
chr13:100890331-100890465
Coord A exon
chr13:100901714-100901877
Coord C2 exon
chr13:100909201-100909413
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTTGGGGGTTGTTTTTAAAGCTG
3' ss Score
5.54
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
ATGGAAGTCTCCGCCAGGAGATCACTTTTCTTTTGAGTCAGCAGGACCTTGATGACACCTACCTCTCCAGCCAGCTGAGCAAACAGCCTTCTGAATCCATCTCCAATGTCCTCCTCATTGGCTTCAATCTAGAAG
Seq A exon
CTGATCCGAAGAACGCCTGCAGCCGCCGCTGTGACCAGCAGAGGGCAGCGCGCGCCAGGCAGCTGCCACCCTGGAGGCCCCACCCCGGACAGCCACCAACTAGCAGGGGCCCGTACCTCCTCGGCTCCAGTGACGGAGTACGCATGTCCTTTCACCAACTTCTG
Seq C2 exon
ATAGGTTGGTGCCTCTTTCAGATTCGCCCAACTCAGAGCAGTGTTGGGAGACCCGGATCTTCGAGATGTGACCTGAGACTCTGCAGAGCGCTCACGCCACCTGTAAGCCCCAAGAGCAGTAGACGGTTTCTCGCCAAGACACCTGCGCTACAACTGTATCAACCATGGCCTCTTCCCTCAGCCCCACCCATTTCTGACTTATCCCCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
Rn.157616_MULTIEX1-2/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGACCTTGATGACACC
R:
AGTTGTAGCGCAGGTGTCTTG
Band lengths:
252-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]