RnoEX0000393 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr12:22284077-22292819:-
Coord C1 exon
chr12:22292559-22292819
Coord A exon
chr12:22287697-22287981
Coord C2 exon
chr12:22284077-22284195
Length
285 bp
Sequences
Splice sites
3' ss Seq
CTCTTTATCTTTTGAGACAGGGT
3' ss Score
3.3
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
TGACAAGTAGGCAGCGCTCACCCAGCTTTTCCTTCGCTTTTAAACCAGACAGCCAATCAATCTGAGCTCTGCTTAGTGACGCAACTAGTAACCAAGGAAAGAGGGCACTGATTTGCGGTGGAGAGCGCACACGCATGCGTACTCATGCCCAACCGCCTTCGGATTCCTGCAAACCTCAAGCTGAGAGAGGTCAGCAAGCCAAGAGAACGAACCAATGGTTTCAAATGAAAGGGAAGGGGCTATTGAAAAACTCTCTAGAAG
Seq A exon
GGTCTCTCAATGAACCCACACGTCACTGATTCAACTATACTGTCTGGCCAAGGGACCCAAGAGATCCTCCTGTGTCTGCCTCTCCAGTGCAGGGACTACAGCATGCGCTACGACAGCAAGCTCTTCACATGGACGCTAGGGCTGGAACTCAGGTCCTTAACATTTGTGCAGCAAGGATGCTACTGAGTCATCTCCCAGTACTCCCGCCTCACGTTCTCACGTAGCCCAGGGTGTCCTTGAACTCCAGATCCTCCTGCCTCAGCATCCTGAGAGCTAGGATTACAG
Seq C2 exon
GGTCTGCGTAGTCCAAGGTGGACCTTGTCTAGCCCCAAGCTGGCTGCAAACACGTGGCAGTTCTCCCTCTCAAGTACTGTGGTTCCAGCTACTCAGCAGGCTGAGGCAAGAAAAGGATT
VastDB Features
Vast-tools module Information
Secondary ID
Rn.160861_MULTIEX1-1/2=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCTCTGCTTAGTGACGC
R:
GCTGAGTAGCTGGAACCACAG
Band lengths:
297-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]