RnoINT0004095 @ rn6
Intron Retention
Gene
ENSRNOG00000054206 | AABR07035778.1
Description
NA
Coordinates
chr12:22288652-22289650:+
Coord C1 exon
chr12:22288652-22288798
Coord A exon
chr12:22288799-22288940
Coord C2 exon
chr12:22288941-22289650
Length
142 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTCACTCTGTCTCCCCACAGAGG
3' ss Score
12.51
Exon sequences
Seq C1 exon
ATATTCTCTCCAAGTGTGACTTTGAAGACAATTCCAGACCTTTCTGTGACTGGTCTCAAATGTCTCAGGATGATGGGGACTGGGTTCGGACTACTGGGCCCTCCCTGACTGGCACTTCTGGCCCCCCCGGGGGGTACCCCAATGGAG
Seq A exon
GTGAGGAGTCTGAGGGAAGCCTAAAGTTTGGTGGAGGACAGTGGAGAAGGGATAAAGTTGGAAGCAGAGCTGAACAGGAGGTGGATGGGACCGCCCCTGGGGACGGCAAGGCCTCAGCCCTTTTCACTCTGTCTCCCCACAG
Seq C2 exon
AGGGGTATTACCTGCACATGGATCCCAAGACCTTCCCTCGGGGCGGAGTGGCACGCCTGCGTAGCCCTGACATATGGGAGCAAGGCCCACTTTGCGTCCATTTTGCCTTCCACATGTTTGGGCTGTCATGGGGTGCCCAGCTCAGACTGCTGCTGATCAGGGGCCGGAAGCACCACCGGCCCTACATGCTCTGGAAACATGTGAACACCCAGAGTCCCTCTTGGATGCCCACCACTGTCACTGTGCCAGCAGATCATGATATACCAAGCTGGGTGAGGTCAAGAGCAGACCTAGAGGTCTGGTAGGGAAGGGATCTAAAGGAAGGGGCTTAGGAAGGTAGGCTGTGGCAAAGGGGGGCACCCAGAGGGCAGTCAGGGTTTTCCTACATCAAGCCTGGTGACCTGGGATCAGTCTCCAGGACTCATGTGGGAAAAGGCTAGAACCAACCCCAAAAGTTGTCCTCTGACTCACGTTTATGTTATGTGTTATAAATGAATGGAATTTTTAAAAAGAGGAGACCTAGATCCCCAGCCATCTGAAGGATGGAAACCAGCAACCACAGAGAAAGGAGGGCCAATCACGTGGCCCGCAGGGTCAGGGTCTCTTTGTCTCTAATCCGCAGCTGATGTTCGAAGGCGTGAGAGGAAACACCGCATACCTGGACATTTCTCTGGATGGCCTCTCTATCCAGCGCGGTACCTGCAATCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054206:ENSRNOT00000079605:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGGATGATGGGGACTGG
R:
CTGATCAGCAGCAGTCTGAGC
Band lengths:
245-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]