RnoEX0000425 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr9:10024391-10029617:-
Coord C1 exon
chr9:10029504-10029617
Coord A exon
chr9:10025013-10025207
Coord C2 exon
chr9:10024391-10024513
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTGGTTGCTGCCTAGGTG
3' ss Score
6.25
5' ss Seq
AATGTGGGT
5' ss Score
2.76
Exon sequences
Seq C1 exon
GGTCTCATTCTGGACATGGTCAGTGACAACTTGTTGTCTTATCCAAAGAGCCGCGGCTTTCTCGTCGATGGCTTCCCCAGAGAGCTGGAACAGGCCAAAGAGTTTGAGCGGATT
Seq A exon
GTGGGCAGGGCCCCCAACATAGTCATAGTGTTTGACTGCTCCATGGAGACCATGGTGCGCAGAGTGCTACGACGAGGACAGGTGGAGCACCGGGCAGATGATTCAGAGCTGGCCATCCGCAAGCGCCTAGAGACACACTACACCCTATGTGAGCCCGTCCTGACCTTTTACCAGCAAAAGAACCTTCTGAGAAAT
Seq C2 exon
ATATTAGCTGAAGGAGCCCCTGAAAGCATCTTCGCCAAGTGCTGTTCAGTCATTGAGAGTCTGCAGTGAGCTAGGTAGGACTGGGCCAACATCTCGCCTACCCTTCTCCACAGCAGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
Rn.162359_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCATTCTGGACATGGTCA
R:
CTGCTGTCTGCTGTGGAGAAG
Band lengths:
237-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]