MmuEX1012181 @ mm10
Exon Skipping
Gene
ENSMUSG00000109739 | Gm17949
Description
predicted gene, 17949 [Source:MGI Symbol;Acc:MGI:5010134]
Coordinates
chr17:57012596-57020294:+
Coord C1 exon
chr17:57012596-57012795
Coord A exon
chr17:57019404-57019598
Coord C2 exon
chr17:57020168-57020294
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTGGTTGCTGCCTAGGTG
3' ss Score
6.25
5' ss Seq
CATGTGGGT
5' ss Score
2.93
Exon sequences
Seq C1 exon
ATATCCTGAGGTATCCCCTGATCATCTTCGTGGTGGGGGGGCCCGGCTGCGGGAAAGGGACCCAGTGCAGAAACATGGCTCTGAAATACGGCTTCTACCATGTGGAGCTGGGCCAGCTGCTGCGGGAGGAGGCTCAGAGAAGCACCCAGAGGGGACGGCAGATCCGGGACATCATGCAGAAGGGACTCCTGGTACCCACG
Seq A exon
GTGGGCAGGGCCCCCAACATGGTCATAGTGTTTGACTGCTCCATGGAGACCATGGTGCGCAGAGTGCTACGACGAGGACAGGTGGAGCACCGGGCAGATGATTCAGAGCCGGCCATCCGCAAGCGCCTAGAGACGCACTACACCCTATGTGAGCCTGTCCTGACCTTTTACCAGCAAAAGAACCTTCTGCGACAT
Seq C2 exon
ATATTGGCTGAAGAAGCTCCGGAAAGCATCTTTGCCAAGTGCTGTTCCGTCATTGAGAGTCTGCTGTGAGCTAGGTAGGACTGGGCCAACATCTGGCCTACCACAGCACAAAGGACCCAGACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109739_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.046 C2=0.000
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(35.7=83.6)
A:
PF0040617=ADK=PD(38.9=93.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGCAGAAACATGGCTCT
R:
GGTCCTTTGTGCTGTGGTAGG
Band lengths:
256-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types