MmuEX1012180 @ mm10
Exon Skipping
Gene
ENSMUSG00000109739 | Gm17949
Description
predicted gene, 17949 [Source:MGI Symbol;Acc:MGI:5010134]
Coordinates
chr17:57012596-57019598:+
Coord C1 exon
chr17:57012596-57012795
Coord A exon
chr17:57014652-57014765
Coord C2 exon
chr17:57019404-57019598
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCATGCCCTTTCCTTCCCAGGGT
3' ss Score
10.25
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
ATATCCTGAGGTATCCCCTGATCATCTTCGTGGTGGGGGGGCCCGGCTGCGGGAAAGGGACCCAGTGCAGAAACATGGCTCTGAAATACGGCTTCTACCATGTGGAGCTGGGCCAGCTGCTGCGGGAGGAGGCTCAGAGAAGCACCCAGAGGGGACGGCAGATCCGGGACATCATGCAGAAGGGACTCCTGGTACCCACG
Seq A exon
GGTTTGATTCTGGACATGATCAGTGACAACTTGTTGTCTTATCCAAAGATCCGCGGCTTCCTCATCGATGGCTTCCCCAGAGAGCTGGAACAGGCCAAAGAGTTTGAGCGGATT
Seq C2 exon
GTGGGCAGGGCCCCCAACATGGTCATAGTGTTTGACTGCTCCATGGAGACCATGGTGCGCAGAGTGCTACGACGAGGACAGGTGGAGCACCGGGCAGATGATTCAGAGCCGGCCATCCGCAAGCGCCTAGAGACGCACTACACCCTATGTGAGCCTGTCCTGACCTTTTACCAGCAAAAGAACCTTCTGCGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109739_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(35.7=83.6)
A:
PF0040617=ADK=FE(23.6=100)
C2:
PF0040617=ADK=PD(38.9=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGCAGAAACATGGCTCT
R:
CTCTGAATCATCTGCCCGGTG
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types