RnoEX0001225 @ rn6
Exon Skipping
Gene
ENSRNOG00000058030 | AABR07001905.2
Description
NA
Coordinates
chr1:61726521-61729122:+
Coord C1 exon
chr1:61726521-61726590
Coord A exon
chr1:61728609-61728659
Coord C2 exon
chr1:61729045-61729122
Length
51 bp
Sequences
Splice sites
3' ss Seq
CCTTTATGTTACTCTTCCAGGTT
3' ss Score
10.86
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
Exon sequences
Seq C1 exon
GACTTACTGATGAAGTGGAACAAGGAGCCCTGGATGGTGAAGAGAGAGAAGACAGTAGCAAAGGATACAC
Seq A exon
GTTATACATAAGCTTTGTGAGCCATTGCACAGTGGGAGAGAATAGACCTAG
Seq C2 exon
GTACAAAAGTGCAAGAGGAGGAAACTCAGAGAAGGGCAATAGGGAAAAATGGCTGGCTTTCCAGTAAATACATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058030_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGAACAAGGAGCCCTG
R:
TGGAATGTATTTACTGGAAAGCCA
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]