RnoEX0001226 @ rn6
Exon Skipping
Gene
ENSRNOG00000058030 | AABR07001905.2
Description
NA
Coordinates
chr1:61726521-61732064:+
Coord C1 exon
chr1:61726521-61726590
Coord A exon
chr1:61729045-61729122
Coord C2 exon
chr1:61731938-61732064
Length
78 bp
Sequences
Splice sites
3' ss Seq
GCTTTTAATATTAATTTCAGGTA
3' ss Score
7.51
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GACTTACTGATGAAGTGGAACAAGGAGCCCTGGATGGTGAAGAGAGAGAAGACAGTAGCAAAGGATACAC
Seq A exon
GTACAAAAGTGCAAGAGGAGGAAACTCAGAGAAGGGCAATAGGGAAAAATGGCTGGCTTTCCAGTAAATACATTCCAG
Seq C2 exon
GGTTTGTTGACATTCCGCGATGTGGCTGTGGATTTCTCCTCGGAGGAGTGGGAATGCCTGGATTCTGCTCAGAGGGCTTTGTACATTGGTGTGATGTTGGAGAATTACAGCAACCTGGTGTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058030_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGATGGTGAAGAGAGA
R:
CACAGACACCAGGTTGCTGTA
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]