RnoEX0001529 @ rn6
Exon Skipping
Gene
ENSRNOG00000053325 | AABR07009105.1
Description
NA
Coordinates
chr2:86951776-86964358:+
Coord C1 exon
chr2:86951776-86951891
Coord A exon
chr2:86963598-86963724
Coord C2 exon
chr2:86964177-86964358
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGAAACTTTTTTTTTTCCAGGAT
3' ss Score
10.27
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
TCATCAGACGGCAGTCCGTCGTTATCAAGTTTCCCAGTTCGCTGTTCCAACTTAACTTCTCTCCAAAGTTAGACGACTGTACTGTTGAGCTCGGCATTTGGATCTCTGACATGGAG
Seq A exon
GATATGTTGTCATTCTGGGATGTGGCTATATATTTCTCTGGAGAGGAGTGGGAATACCTGGGTCCTGCTCAGTGGAATTTATACAGGGACGTGACATTGGAGAATTACAACAACCTTGTGTTTCTGG
Seq C2 exon
GTCTTGCTTCCTCTAAGCCATACCTGGTCACATTTCTGGAGCAAATAGAGGAGCCTTTAGTTGTGAAGAAAGGAGAGGTTACCACTATGTATTCAGGTAAGTCAGAAGGAGGGTATCAGAGAACAGAGTGGAAAACGCTAAGAGCTAACATAAATCCCTTGAGACACAATATTCTAGTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053325_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTCCGTCGTTATCAAGT
R:
GCGTTTTCCACTCTGTTCTCTGA
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]