RnoEX0001560 @ rn6
Exon Skipping
Gene
ENSRNOG00000056177 | AABR07010085.2
Description
NA
Coordinates
chr2:122715308-122721437:-
Coord C1 exon
chr2:122721344-122721437
Coord A exon
chr2:122716598-122716888
Coord C2 exon
chr2:122715308-122715522
Length
291 bp
Sequences
Splice sites
3' ss Seq
GTATTATTTTATGTCTACAGAGT
3' ss Score
7.76
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
Exon sequences
Seq C1 exon
ACTTGGACTTGAAAATCACATGTTAAAAGCTACAGCAAGAAAGCAAGCAGAGAAAATTGAACAGTTAAAGAAAAATCTACTCAGTGAATTTTTG
Seq A exon
AGTGATGATCTTACTGCAAAACTGGAAACTGCAACGTCCAAATGTCTACATCTCTATAAGCAAAATCAGCTGCTCCAGCGGGAGTTACTCTCTATGAAAATGATACAAAGGAAATATGAAAAATTAAAGAAGCATAAAAAGAAGTTAGAACAAGAAATAGCTAACCTCAGAAGTCACATGGAGCAGCATATGATAGAGTGTGGTCAAATAGAACAGTATAAGTGGGAAATCGAAGAGAAGACAAAGCAGGATTTGGTGGAAAAATTAAAACAAGTCAACCTATTCTTGCAG
Seq C2 exon
GCACAAGCAGCGTATGAGGACAAGCTAGAGAAGCTAAGACACAAACAGAACGCTTCGGTGCGAACTCAGATGGAGCTCAGAATAAGGGACCTGGAGTCTGAATTCTCTAAGATGAAAAGCCAAGTTGACTGTAATCAAATAGAAATGGAAAACTACAAGCAGCTCTACCTAGAAGAAGTGAAAATTAGAAAATCGTTGTCAAATAAATTAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056177_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.021 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120013=DUF3496=PU(48.1=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGGACTTGAAAATCACATGTT
R:
TTCACTTCTTCTAGGTAGAGCTGCT
Band lengths:
276-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]