MmuEX0009592 @ mm10
Exon Skipping
Gene
ENSMUSG00000047696 | Ccdc144b
Description
coiled-coil domain containing 144B [Source:MGI Symbol;Acc:MGI:2681852]
Coordinates
chr3:36017674-36025441:-
Coord C1 exon
chr3:36025348-36025441
Coord A exon
chr3:36019916-36020206
Coord C2 exon
chr3:36017674-36017896
Length
291 bp
Sequences
Splice sites
3' ss Seq
ATATTATTTTATGTCTACAGAGT
3' ss Score
7.83
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
Exon sequences
Seq C1 exon
GCTTGGACTTGAAAATCACAAGTTAAAAGAGACAGCAAGAAAGCAAGCAGAGAAAATTGAACAGTTAAAGAAAAATCTACTAAGTGGAGTTTTG
Seq A exon
AGTGATGATCTTACTGAAAAATTGGAATCTGCATCTGCCAAATATCTACATCTCTATGAACAAAATCAGCTGCTTCGGCGGGAGTTACTGTCTATGAGAACAATACAAAGGAAATGTGAAAAACTAAAGAAGCATAAAAAGAAGTTAGAACAAGAAGTAGTTAGCCTTAGAAGTCACATGAAAAGGAATATGATAGAGTGTGGCCAAATAGAACAGTATAAATGGGAAATCGAAGAGAAGACAAAGCAGGAATTGGTGGGAAAGTTAAAACAAGTCAACCTATTCTTGCAG
Seq C2 exon
AACAGATGAAAGACTGGCAGAGGTCAAAACCAAACTTCTCCTGGAGAGAAAACAGTACCGAGCTTCCCAATACAGCATGGTGGACACAAGGCCTGCCCTGGAGCCCACTTGTCCTAGAGACAGTAATAAATTTTTCATTCCAAGAAGTTTCTCAGGCGAAATCATGCTTCCTAAGTCAGACCTCTGGCACTCAATTGAGACCATGGAAAATTGCAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047696_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.021 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120013=DUF3496=PD(50.9=73.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGACAGCAAGAAAGCAAGC
R:
CTTGGTCTTGCAATTTTCCATGGT
Band lengths:
292-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types