DreEX6100473 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3456593-3459156:-
Coord C1 exon
chr25:3459015-3459156
Coord A exon
chr25:3458214-3458489
Coord C2 exon
chr25:3456593-3456828
Length
276 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTGTGACTCCGTCAGGTG
3' ss Score
6.94
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTTGAAGACCCTGCTGAAGACCGCTAAGAAGCAGTTGCGTGATGGGGGCGGTGGAGCTCTGGACTCTCCTCAGGGCAGCTTCAGAGCGGATGTGAGCCATCGTCTGGAGGCCGAGAGCTCCGTCAGCAGAATGAAGAGCAGG
Seq A exon
GTGGATGATCTGCAGGGTCAGCTGGAGCGAGAGGCGTCGCGCTGCTCTCGGCTGGAGGAGGTGAACCAGCAGCTGAAGGAGAAGCTGAAGAGCCGCAGCCGCAGCCAGGAGCAGACGGAGCGCAGGCAGCTGGAGGACGAGCTGTTGTCTCTGCGCCGGCAGCTGGAGGCCGGAGTCATGGATCAGAGTCAGGCTGAGCAGTACCGCAGGGACACCGAGGAGAGAGCCCGACAGGAGATCCGACACAAGCTGGAGGAGGTCAACCTGTTCCTGCAG
Seq C2 exon
ACTCAGGCGGCATCCCAGGAGGCTCTGGAGCAGATGAAAGCAGCCAATGAGTCTAGTCAGAGAGCTCACCTGGAGCAGCGAATTAGAGACCTGGAGGCGGAACTAAGTCGATCACGCAGTGTGCAGCAGGACAGTCAGATCCAGAGAGACTCCAGCCAATCAGAGCTACAGCGCTACAAACAGCTGTACGGCGAAGAACTGCGCCTGCGCAAGAGTCTGGCTGCAAAACTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768-'51-48,'51-47,52-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.783 C2=0.547
Domain overlap (PFAM):
C1:
PF150351=Rootletin=PD(11.1=31.2),PF150351=Rootletin=PU(22.1=52.1)
A:
PF150351=Rootletin=PD(77.0=93.5)
C2:
PF120013=DUF3496=PU(55.8=73.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAGACCGCTAAGAAGC
R:
GCTGTAGCTCTGATTGGCTGG
Band lengths:
303-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]