HsaEX0004414 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27303423-27311616:-
Coord C1 exon
chr10:27311487-27311616
Coord A exon
chr10:27306431-27306721
Coord C2 exon
chr10:27303423-27303640
Length
291 bp
Sequences
Splice sites
3' ss Seq
ATATTATTGTCTTCATTCAGATT
3' ss Score
9.27
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
ATTTAAGAACCTCTTAAAAATGACAAGAAAGAAGTTAAATGAATATGAAAATGGAGAATTTAGTTTCCATGGAGATTTAAAAACTAGTCAATTTGAAATGGATATTCAGATTAATAAGCTAAAACATAAG
Seq A exon
ATTGATGATCTTACAGCAGAACTGGAGACTGCAGGTTCAAAATGTCTACATCTGGATACAAAGAACCAAATTCTTCAAGAGGAGTTGTTATCTATGAAAACAGTACAAAAGAAATGTGAAAAACTACAGAAGAATAAAAAGAAGTTGGAACAAGAAGTGATCAACCTGAGAAGTCATATAGAAAGGAATATGGTAGAACTTGGTCAAGTCAAACAGTATAAACAGGAGATTGAAGAAAGAGCAAGACAGGAAATAGCAGAAAAATTAAAAGAAGTCAATCTATTTTTACAG
Seq C2 exon
GCACAAGCAGCATCTCAAGAAAACTTAGAGCAGTTTAGAGAGAATAATTTTGCTTCAATGAAAAGTCAGATGGAACTCAGAATTAAAGATCTGGAATCTGAACTCTCCAAAATAAAAACTTCTCAAGAAGACTTTAATAAAACCGAACTGGAAAAATATAAGCAACTCTATCTAGAAGAATTAAAAGTTAGAAAATCTTTGTCAAGTAAACTAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890_MULTIEX1-7/9=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120013=DUF3496=PU(46.4=83.9),PF119023=DUF3422=PU(60.0=77.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAATGGAGAATTTAGTTTCCATGG
R:
GAGTTGCTTATATTTTTCCAGTTCGG
Band lengths:
252-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)