RnoEX0009605 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150552078-150557621:-
Coord C1 exon
chr4:150557492-150557621
Coord A exon
chr4:150552891-150553163
Coord C2 exon
chr4:150552078-150552292
Length
273 bp
Sequences
Splice sites
3' ss Seq
CCAGCATCTTATTCCTGCAGATT
3' ss Score
8.3
5' ss Seq
CAGGTCAAC
5' ss Score
2.31
Exon sequences
Seq C1 exon
ATTTAAGGAAGTCTTAAAAATGACCAAAAAAGAATTAAGTGAATATGAAAACAGAGAACTTCATCTTCATCAAGATATGAAAAGCAGTCAACTTGAAATGGATGTCCCAGTTAATGCACTAGTAAAAAAG
Seq A exon
ATTGATGATCTTACAGAAAAACTGGAGACTGCATCTTCAAAATGTCTACATCTGGGTAAAAGAAATCAGCTGCTTCAGCAAGAATTACTGCTGATGAAAACTCTACAGAAGAAGTGTGGGAAACTCGAGAAGAGTAAAAGGAAACTGGAGCAGGAGGTGGCGAGCCTCAGGAGCCACATAGAGGAGAACATGGTGGAGCACAGCCGAGTGCAGCAGTACGCGAGGGAGGTCGAGGATCGAGCGAGGCAGGACTTGGTGGAAAAGTTAAAACAG
Seq C2 exon
GCTCAAGCAGCGTCTCAGGAAAACTTGGAGCAGTTAAGAGAGAACAGTAACGCTTCACTTAGAAGTCAGATGGAGCTCAGGATTCAAGACCTGGAATCCCAGCTCTACAAAATGAAAGCCCAGGAAGACTTCGACAAAATAGAACTAGAAAAGTACAAGCAACTCTACCAGGAAGAGTTCAGAGTTAGAAAAGCGTTGTCCAGTAAACTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'42-42,'42-41,43-42
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.072 C2=0.153
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120013=DUF3496=PU(46.8=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAACTTCATCTTCATCAAGA
R:
TGTTTAGTTTACTGGACAACGCT
Band lengths:
294-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]