BtaEX6063882 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17912374-17917942:-
Coord C1 exon
chr13:17917813-17917942
Coord A exon
chr13:17913175-17913469
Coord C2 exon
chr13:17912374-17912587
Length
295 bp
Sequences
Splice sites
3' ss Seq
GTATTGTTTTATTCTTGCAGATT
3' ss Score
10.18
5' ss Seq
TTCATTTGT
5' ss Score
-15.66
Exon sequences
Seq C1 exon
ATTTAAGAAACTCTTAAAAATGACAAGAAGGAAGTTAAATGAATATGAAAATGGAGAGCTTAGTTTCCATGGAGATTTAAAAACCAGTCAAACTGAAATGGATATTCAAATTAATAAGCTAAAACATAAG
Seq A exon
ATTGAGGATCTTACAGCAGAGCTGGAAGCTGCATCTTCAAAATGTCTGCACCTGGATGCAAAAAATCAAGTTCTTCGAGAGGAGTTATTATCTATGAAAGGAATGCAAAAGAAATGTGAAAAACTAGAGGAGAAGAAAAAGAAGTTGGAGCAAGAAGTAGTGCACCTCAGAAGTCATATAGAAATGAATATGATCGAACACAGTCAAGTAGAGCAGTATAAACGGGAAATTGAAGAAAGGGCGAGACAGGATCTCGTAGAGAAATTAAAGGAAGTCAACCTATGTTTGCAGGTTC
Seq C2 exon
AAGCAGCATCTCAGGAGAACTTAGAGCAGTTACAAGAGAAGAATAATGCTTCCATAAGAAGTCAGATGGAACTCAGAATTAAAGACTTGGAATCTGAACTCTCCAAGGTGAAAACTTTGCAAGAAGATTCTCATAAAGCAGAGTTGGAAAAATATAAGCAACTCTACCTAGTAGAACTAGAAGTTAGAAAGTCGTTGGAAGGTAAACTAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'32-34,'32-33,33-34=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.071 C2=0.181
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120013=DUF3496=PU(47.3=73.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGCTTAGTTTCCATGGAGA
R:
TGTCTAGTTTACCTTCCAACGACT
Band lengths:
292-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]