GgaEX6000883 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:26130305-26132487:+
Coord C1 exon
chr1:26130305-26130446
Coord A exon
chr1:26131165-26131446
Coord C2 exon
chr1:26132359-26132487
Length
282 bp
Sequences
Splice sites
3' ss Seq
CATTTTATTACTGTCTATAGGTT
3' ss Score
7.19
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTGCAAGAGGCTTCTGAACAGAGCTGTGAAGAAACTAAGGATGTATGAGGCCAGAGAAAGAGAGTCCCAATTTAATTTCCAGGGAGAAATGAAGAACAGGTATTCTGAAATGGTGAATGAAGTTGGCAAATTAAGAACAAAG
Seq A exon
GTTACTGAACTTTCTCAGCAGCTGGAGTTAGAGTCTAAAAAATGCATCCAGCTGGAAGCACAAAACCAGGATTTGCGAGAAGAGCTGTCTGCTCTGCGTGAGAACCATGAAAAACTGGAGAAGAGCAAGTGCCAGCTGAAGGAAGAGGTGGCAAACCTCAGACATCATTTGGAGGCTAATATGGTGAACCACAGCCAAATAGAACAGTACAAGAAAGAGATGGAAGAACGAGCAGGACAAGAAATCAGACAAAAACTACAAGAAGTCAATTTGTTTTTGCAG
Seq C2 exon
ACACAGGCAGCCTCCCAGGACAGGTTAGAACAAATCAGAGCCAATCATCATGCCTCACTGAGAAACCAACTAAAGCACAGAATTAAAGATCTCGAATGTGAGTTGGACAGAATAAAAAATACTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'27-24,'27-22,28-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.372 C2=0.558
Domain overlap (PFAM):
C1:
NO
A:
PF120013=DUF3496=PU(25.6=16.8)
C2:
PF120013=DUF3496=PU(28.8=53.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAAGAGGCTTCTGAACAGA
R:
TTTTTATTCTGTCCAACTCACATTCG
Band lengths:
260-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]