MmuEX6006495 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118507638-118511695:-
Coord C1 exon
chr6:118511566-118511695
Coord A exon
chr6:118508490-118508780
Coord C2 exon
chr6:118507638-118507852
Length
291 bp
Sequences
Splice sites
3' ss Seq
GTAGCATTTTATTCCTGCAGATT
3' ss Score
7.36
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
ATTTAAGGAAGTCTTAAAAATGACCAAAAAAGAATTAAATGAATATGAAAACAGAGAACTTAATCTTCGTCAAGATATAAAAAACAATCACCTTGAAATGGATATCCCAGTTAGTACACTAATAAAAAAG
Seq A exon
ATTGATGATCTTACAGCAAAACTGGAAACTGCATCTTCAAAATGTCTACATCTGGGTAAAAAAAATCAGCTGCTTCAGCAGGAGTTACTATTGATGAGGACTATACAAAAGAAGTGTGGGAAACTAGAGAAGAATAAAAAGCAATTGGAGCAGGAGGTCGTGAACCTCAGAAGTCACATGGAGAAGAACATGGTGGAGCACAGCCAAGCACAGCAGTACGCGCGGGAGGTCGAAGAGCGAGCGAGGCAGGACTTGGTGGAAAAGTTAAAACAGGTCAACCTCTTCCTGCAG
Seq C2 exon
GCTCAAGCAGCATCCCAGGAGAGCTTGGAGCAGTTAAGAGAGAACAGTAACGCTTCGGTTAGAAGTCAGATGGAGCTCAGGATTAAAGACCTGGAGTCCCAGCTCTACAGAATGAAAGCCCAGGAAGACTTCGATAAAATAGAACTGGAAAAGTATAAGCAGCTCTACCAGGAAGAGTTCAGAGCTAGAAAATCGCTGTCAAGTAAACTAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'39-46,'39-44,41-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.227 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120013=DUF3496=PU(46.8=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAACTTAATCTTCGTCAAGA
R:
TGTTTAGTTTACTTGACAGCGATT
Band lengths:
294-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types