Special

MmuEX0009592 @ mm9

Exon Skipping

Gene
ENSMUSG00000047696 | Ccdc144b
Description
coiled-coil domain containing 144B [Source:MGI Symbol;Acc:MGI:2681852]
Coordinates
chr3:35917756-35924363:-
Coord C1 exon
chr3:35924270-35924363
Coord A exon
chr3:35918838-35919128
Coord C2 exon
chr3:35917756-35917970
Length
291 bp
Sequences
Splice sites
3' ss Seq
ATATTATTTTATGTCTACAGAGT
3' ss Score
7.83
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
Exon sequences
Seq C1 exon
GCTTGGACTTGAAAATCACAAGTTAAAAGAGACAGCAAGAAAGCAAGCAGAGAAAATTGAACAGTTAAAGAAAAATCTACTAAGTGGAGTTTTG
Seq A exon
AGTGATGATCTTACTGAAAAATTGGAATCTGCATCTGCCAAATATCTACATCTCTATGAACAAAATCAGCTGCTTCGGCGGGAGTTACTGTCTATGAGAACAATACAAAGGAAATGTGAAAAACTAAAGAAGCATAAAAAGAAGTTAGAACAAGAAGTAGTTAGCCTTAGAAGTCACATGAAAAGGAATATGATAGAGTGTGGCCAAATAGAACAGTATAAATGGGAAATCGAAGAGAAGACAAAGCAGGAATTGGTGGGAAAGTTAAAACAAGTCAACCTATTCTTGCAG
Seq C2 exon
ACACAAGCAGCGTATGAAGACAAGCTAGAGAAGTTAAGACAGAAACAGAACGCTTCAGTGCGAACTCAGATGGAGCTCAGAATAAAGGACCTGGAGTCTGAATTCTCTAAGATGAAAAGTCAAGTTGATTGTAATCAAATAGAAATGGAAAACTATAAGCAGCTCTACCTAGCGGAAGTGAAAATTAGAAAATCATTGTCAAATAAATTAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047696-'7-8,'7-7,8-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.062 A=0.021 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
PF120013=DUF3496=PU(48.1=72.2)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000058450





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000132995
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr10:27017502-27017792 
ALTERNATIVE
HsaEX0004414
(ANKRD26)
Human
(hg19)
chr10:27306431-27306721 
HIGH PSI
HsaEX0004414
(ANKRD26)
Rat
(rn6)
chr4:150552891-150553163 
HIGH PSI
RnoEX0009605
(Ankrd26)
Cow
(bosTau6)
chr13:17913175-17913469 
HIGH PSI
BtaEX6063882
(ANKRD26)
Chicken
(galGal4)
chr1:24104700-24104981 
HIGH PSI
GgaEX6000883
([1])
Chicken
(galGal3)
chr1:26131165-26131446 
HIGH PSI
GgaEX6000883
([2])
Zebrafish
(danRer10)
chr25:3458214-3458489 
HIGH PSI
DreEX6100473
(ANKRD7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AATCACAAGTTAAAAGAGACAGCA

				
R: 
TGATTTTCTAATTTTCACTTCCGCT

				
Band lengths: 
276-567

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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