Special

MmuEX0009593 @ mm9

Exon Skipping

Gene
ENSMUSG00000047696 | Ccdc144b
Description
coiled-coil domain containing 144B [Source:MGI Symbol;Acc:MGI:2681852]
Coordinates
chr3:35916596-35919128:-
Coord C1 exon
chr3:35918838-35919128
Coord A exon
chr3:35917756-35917970
Coord C2 exon
chr3:35916596-35916818
Length
215 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTCAATTTGCTGTAGACA
3' ss Score
6.67
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGTGATGATCTTACTGAAAAATTGGAATCTGCATCTGCCAAATATCTACATCTCTATGAACAAAATCAGCTGCTTCGGCGGGAGTTACTGTCTATGAGAACAATACAAAGGAAATGTGAAAAACTAAAGAAGCATAAAAAGAAGTTAGAACAAGAAGTAGTTAGCCTTAGAAGTCACATGAAAAGGAATATGATAGAGTGTGGCCAAATAGAACAGTATAAATGGGAAATCGAAGAGAAGACAAAGCAGGAATTGGTGGGAAAGTTAAAACAAGTCAACCTATTCTTGCAG
Seq A exon
ACACAAGCAGCGTATGAAGACAAGCTAGAGAAGTTAAGACAGAAACAGAACGCTTCAGTGCGAACTCAGATGGAGCTCAGAATAAAGGACCTGGAGTCTGAATTCTCTAAGATGAAAAGTCAAGTTGATTGTAATCAAATAGAAATGGAAAACTATAAGCAGCTCTACCTAGCGGAAGTGAAAATTAGAAAATCATTGTCAAATAAATTAAGCAA
Seq C2 exon
AACAGATGAAAGACTGGCAGAGGTCAAAACCAAACTTCTCCTGGAGAGAAAACAGTACCGAGCTTCCCAATACAGCATGGTGGACACAAGGCCTGCCCTGGAGCCCACTTGTCCTAGAGACAGTAATAAATTTTTCATTCCAAGAAGTTTCTCAGGCGAAATCATGCTTCCTAAGTCAGACCTCTGGCACTCAATTGAGACCATGGAAAATTGCAAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047696-'8-9,'8-8,9-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.021 A=0.000 C2=0.040
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
PF120013=DUF3496=PU(48.1=72.2)

							
C2:
PF120013=DUF3496=PD(50.9=73.3)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000058450





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000132995
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr10:27014494-27014711 
HIGH PSI
HsaEX0004415
(ANKRD26)
Human
(hg19)
chr10:27303423-27303640 
HIGH PSI
HsaEX0004415
(ANKRD26)
Rat
(rn6)
chr4:150552078-150552292 
HIGH PSI
RnoEX6014805
(Ankrd26)
Cow
(bosTau6)
chr13:17912374-17912591 
Chicken
(galGal4)
chr1:24105894-24106129 
HIGH PSI
GgaEX0013383
([1])
Chicken
(galGal3)
chr1:26132359-26132594 
HIGH PSI
GgaEX0013383
([2])
Zebrafish
(danRer10)
chr25:3456593-3456828 
HIGH PSI
DreEX6100474
(ANKRD7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TTCGGCGGGAGTTACTGTCTA

				
R: 
ATGCTGTATTGGGAAGCTCGG

				
Band lengths: 
296-511

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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