RnoEX6014805 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150550812-150553163:-
Coord C1 exon
chr4:150552873-150553163
Coord A exon
chr4:150552078-150552292
Coord C2 exon
chr4:150550812-150551040
Length
215 bp
Sequences
Splice sites
3' ss Seq
GCGCTTCCGGTCTGCCGTAGGCT
3' ss Score
8.21
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATTGATGATCTTACAGAAAAACTGGAGACTGCATCTTCAAAATGTCTACATCTGGGTAAAAGAAATCAGCTGCTTCAGCAAGAATTACTGCTGATGAAAACTCTACAGAAGAAGTGTGGGAAACTCGAGAAGAGTAAAAGGAAACTGGAGCAGGAGGTGGCGAGCCTCAGGAGCCACATAGAGGAGAACATGGTGGAGCACAGCCGAGTGCAGCAGTACGCGAGGGAGGTCGAGGATCGAGCGAGGCAGGACTTGGTGGAAAAGTTAAAACAGGTCAACCTCTTCTTGCAG
Seq A exon
GCTCAAGCAGCGTCTCAGGAAAACTTGGAGCAGTTAAGAGAGAACAGTAACGCTTCACTTAGAAGTCAGATGGAGCTCAGGATTCAAGACCTGGAATCCCAGCTCTACAAAATGAAAGCCCAGGAAGACTTCGACAAAATAGAACTAGAAAAGTACAAGCAACTCTACCAGGAAGAGTTCAGAGTTAGAAAAGCGTTGTCCAGTAAACTAAACAG
Seq C2 exon
GACTACTGAGAGGCTGGAGGAGACCAGCACCAAGCTGCTCCTGGAGGAGCAGCAGAACAGGTCTCTGCTGAGCTCTCTCAGTACGAGGCCTGTTGTAGAGTGTCCCTGTGTTGGAAAGCTTCATAATAGTTTGGTATTAAACAGAACTCTTATTCCAAGAGAAAGCCTAGCGGTTCCTACCTCAGGCCTACAGCCATCAAATAAAAGAGTGGAGATCTTCCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'44-43,'44-42,45-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.153 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
PF120013=DUF3496=PU(46.8=72.2)
C2:
PF120013=DUF3496=PD(52.3=75.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTCAGGAGCCACATAGA
R:
AGGAACCGCTAGGCTTTCTCT
Band lengths:
308-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]