BtaEX0001340 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11459700-11464553:+
Coord C1 exon
chr13:11459700-11459867
Coord A exon
chr13:11462914-11463083
Coord C2 exon
chr13:11464325-11464553
Length
170 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCAATTTGCCTTAGACA
3' ss Score
7.77
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GCAGTGGTGAGACAACTTCAACAAGAACTGGATGACGCTGTAAAAAAGCAGTCTGTGTCGGAGGCTTCACTGAGGCTCACGTCACGTTATTGTCCTAAGTTAGAAGCTGAGGCTCAGGATTTGAAGAACAATTGTAAACTACTACAACCACGTCAAGTCACAAGTCAG
Seq A exon
ACACAAGCTGGATTTCAACAGATGGAAGTCAGAATTAAAGACTTGGAATCTGAACTCTCCAAAATGAAAAGTTTGCAAGAAGATTCTAATAAAGCAGAGTTGGAAAAATATAAGCAACTCTACCTAGTAGAATGTGAACTTATAAAGTCATTGGAAGATAAACTAGACAA
Seq C2 exon
GACTCACCAGAGGCTGGCAGTGGTCAGCGCCAAACTTCAGGTGGAGAAGCAGCAGAACAGATCTTTCTTCAACACTGTTAGCACGAGGCCAGTCCTGGAGCCCCCTTGTGTTGGAAATTTCAATAATCCTTTAGTGCTCAACGGAAATCTTACTCCAAGAGCAAACTTAAGGTTTTCTACCTCAATTCCACGCCCTTCGAATAATAGCATGGAGACTTACTTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046_MULTIEX1-38/38=36-C2
Average complexity
S
Mappability confidence:
86%=86=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCAGTCTGTGTCGGAGG
R:
ATTTCCAACACAAGGGGGCTC
Band lengths:
243-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development