DreEX6100474 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3453593-3458489:-
Coord C1 exon
chr25:3458214-3458489
Coord A exon
chr25:3456593-3456828
Coord C2 exon
chr25:3453593-3453842
Length
236 bp
Sequences
Splice sites
3' ss Seq
TGTACATGCTGTGGTTTCAGACT
3' ss Score
6.06
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGGATGATCTGCAGGGTCAGCTGGAGCGAGAGGCGTCGCGCTGCTCTCGGCTGGAGGAGGTGAACCAGCAGCTGAAGGAGAAGCTGAAGAGCCGCAGCCGCAGCCAGGAGCAGACGGAGCGCAGGCAGCTGGAGGACGAGCTGTTGTCTCTGCGCCGGCAGCTGGAGGCCGGAGTCATGGATCAGAGTCAGGCTGAGCAGTACCGCAGGGACACCGAGGAGAGAGCCCGACAGGAGATCCGACACAAGCTGGAGGAGGTCAACCTGTTCCTGCAG
Seq A exon
ACTCAGGCGGCATCCCAGGAGGCTCTGGAGCAGATGAAAGCAGCCAATGAGTCTAGTCAGAGAGCTCACCTGGAGCAGCGAATTAGAGACCTGGAGGCGGAACTAAGTCGATCACGCAGTGTGCAGCAGGACAGTCAGATCCAGAGAGACTCCAGCCAATCAGAGCTACAGCGCTACAAACAGCTGTACGGCGAAGAACTGCGCCTGCGCAAGAGTCTGGCTGCAAAACTGGACAG
Seq C2 exon
GTCGAATGAGCGTCTAGCGGAGGCGAACACTAAACTCCTGAGCGAGCGGCAGCGCAGTAAGTCTCTGCTCAGCGGCAGCTTCATGAACGCAGGGTTAGCGGCTCCAGCTCTGGATGTGTCGTCTCTGGGCTCCGTCGGGGCCTACGGTGCGTCTCTGGGGCCCCTGAACCGCAGCCTGGGCCTCGGGACGCCTCTGCTGGGCACGCTGGGAGAATCACAGAGCAGCCGCGTGGAGGCATACCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768-'52-49,'52-48,53-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=0.547 C2=0.137
Domain overlap (PFAM):
C1:
PF150351=Rootletin=PD(77.0=93.5)
A:
PF120013=DUF3496=PU(55.8=73.4)
C2:
PF120013=DUF3496=PD(42.3=52.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATCTGCAGGGTCAGCTG
R:
TTAGTGTTCGCCTCCGCTAGA
Band lengths:
306-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]