GgaEX0013383 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:26131165-26133248:+
Coord C1 exon
chr1:26131165-26131446
Coord A exon
chr1:26132359-26132594
Coord C2 exon
chr1:26133002-26133248
Length
236 bp
Sequences
Splice sites
3' ss Seq
AATTGCATTATCTGCTTCAGACA
3' ss Score
4.81
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTACTGAACTTTCTCAGCAGCTGGAGTTAGAGTCTAAAAAATGCATCCAGCTGGAAGCACAAAACCAGGATTTGCGAGAAGAGCTGTCTGCTCTGCGTGAGAACCATGAAAAACTGGAGAAGAGCAAGTGCCAGCTGAAGGAAGAGGTGGCAAACCTCAGACATCATTTGGAGGCTAATATGGTGAACCACAGCCAAATAGAACAGTACAAGAAAGAGATGGAAGAACGAGCAGGACAAGAAATCAGACAAAAACTACAAGAAGTCAATTTGTTTTTGCAG
Seq A exon
ACACAGGCAGCCTCCCAGGACAGGTTAGAACAAATCAGAGCCAATCATCATGCCTCACTGAGAAACCAACTAAAGCACAGAATTAAAGATCTCGAATGTGAGTTGGACAGAATAAAAAATACTCAACAGGACAGTATTTTTCAAAAAGAATCCACACAGGCTGAAGTGGAAAAATACAAAGAAATGTATCTGGAAGAAATGAAAATTAGAAGAAGCCTAGCAAATAAGCTGGAAAG
Seq C2 exon
AGCCAATGAGAGACTAGCAGAAGCCAATGCTAAGCTCCTTCAGGAGCGCCACAGAAGCAAATCTTTAATTGCAAGTAGCATTGTCACTGGAGGTCTGTCTGCAAGTCCAGTTCTGTATTCAACTGAACTGGGACATCTTGGCAACAATTTGGCACTGAACAGAAGTCTCAGCCTAGGAGGAAGCTTCCTAGGCACAGCTGGGAATGCGTTATCATCAAGAAACAAGGTTGAAGCCTACATGGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'28-26,'28-24,30-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=0.473 C2=0.385
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PU(25.6=16.8)
A:
PF120013=DUF3496=PU(28.8=53.5)
C2:
PF120013=DUF3496=PD(38.9=85.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCGTGAGAACCATGAA
R:
TTGCAGACAGACCTCCAGTGA
Band lengths:
296-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]