RnoEX0001680 @ rn6
Exon Skipping
Gene
ENSRNOG00000024504 | AABR07017236.1
Description
NA
Coordinates
chr15:18921712-18923414:+
Coord C1 exon
chr15:18921712-18922561
Coord A exon
chr15:18923009-18923112
Coord C2 exon
chr15:18923241-18923414
Length
104 bp
Sequences
Splice sites
3' ss Seq
AATATTTTGAAATCACTCAGGCT
3' ss Score
2.83
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATCTCAGTATGAGATGGATGAGATGGAAATGCTTGAACTTTTGCAGCGGACAATGGTTAACACAGAAACTCGACTCATCAGAATGCAGAGAATAATTGTTTGTGGTGGGCTCAGCCACAAATGGGACATCTGCATCACACCCCTTCCCAGAAGGCTCTGGGAGCATCATGAGACAGAAGGCCTGACTTAGGCTGAGCAAGTTTATTGAGAAGTACAGCCTTACATATGCTATTTTCAGGGGGTTGGGTGAAACAGTCAAGCAAGAGCTAAGTCAATGTTTGCAAAGAGAACATGGCATACCTTGGACACAGACACCTAAGGACTGATAAGCAAAGTCCAGGGGGAAGACATGTGTCCCCCAGAAGCCACAGCTTAAGAGTCTTTTGAGGCACTGGCTCCAGTCCTGGACTGTCTTACCAAGTTCACTCCTGGACAAGGACACAGAACAAGCTCCCTTATTTCCCTTTGTCTTTTCATCTGGGTCTCTGAGGAAGCCAGAG
Seq A exon
GCTATCTAGGTGTGTTTACACATACCTACTTGGGAGGCTGAGGCAGGAAGGTTTGAATTCAGGCAAGGCTGTGCCAAACAGGCGACCCTGTCTCAAAGAACAAG
Seq C2 exon
GCCTCCCAGCACCAGCGTGAGGATTGTGTGGCTGTCTTGCTGCAGCACGGTGCGGACCCCAATGCTGTGGATGCTCTTGGGAACACTGCCCTCCACTATGCAGTGCATAGTGAGAACGCGTCCATAGCCTCCCAGCTCCTTGAACACAGTGCAAATATTGAAGCTAGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024504-'3-3,'3-2,4-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
NA
A:
PF127962=Ank_2=PD(1.4=33.3)
C2:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)
Main Inclusion Isoform:
ENSRNOT00000036754fB40
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTTTTGAGGCACTGGCT
R:
ACGCGTTCTCACTATGCACTG
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]