RnoEX0001681 @ rn6
Exon Skipping
Gene
ENSRNOG00000024504 | AABR07017236.1
Description
NA
Coordinates
chr15:18920373-18923414:+
Coord C1 exon
chr15:18920373-18920494
Coord A exon
chr15:18921926-18922040
Coord C2 exon
chr15:18923241-18923414
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAAATTCCTCATTCTCACAGAAC
3' ss Score
6.74
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
ATCACTGGATACTGCGCGGTGGGACAGCTCCACCGGGCTGCGAGTGTGGGCGCTGTAGCTACAGTGGAGCGTTTCCTCACGTTCCGGCTAAACGGTGTCAACGACACAGACAAAAGGAACAG
Seq A exon
AACTGCACTGCATTATGCTTGTGCGCATGGCCATCTGGGAGTGGTGACTCTTCTAATAGAGAGGAACTGCAACGTTAATGCCCGCGATGATGACAAGTGCACGCCTCTCATTAAG
Seq C2 exon
GCCTCCCAGCACCAGCGTGAGGATTGTGTGGCTGTCTTGCTGCAGCACGGTGCGGACCCCAATGCTGTGGATGCTCTTGGGAACACTGCCCTCCACTATGCAGTGCATAGTGAGAACGCGTCCATAGCCTCCCAGCTCCTTGAACACAGTGCAAATATTGAAGCTAGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024504_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.034
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=75.6)
A:
PF127962=Ank_2=FE(40.4=100)
C2:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTGGATACTGCGCGGT
R:
ACGCGTTCTCACTATGCACTG
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]