RnoALTA0000239-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000024504 | AABR07017236.1
Description
NA
Coordinates
chr15:18920373-18922040:+
Coord C1 exon
chr15:18920373-18920494
Coord A exon
chr15:18921712-18921925
Coord C2 exon
chr15:18921926-18922040
Length
214 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATA
5' ss Score
4.58
3' ss Seq
TCTCCTTTTTACTTAAACAGGCT
3' ss Score
9.41
Exon sequences
Seq C1 exon
ATCACTGGATACTGCGCGGTGGGACAGCTCCACCGGGCTGCGAGTGTGGGCGCTGTAGCTACAGTGGAGCGTTTCCTCACGTTCCGGCTAAACGGTGTCAACGACACAGACAAAAGGAACAG
Seq A exon
GCTACCCCAAGAATGGATGTAGCCATGATAGAGCACTAGCCCTGAATGAGGCAGGCCTTGTCTTAAGTCTGGAAGAAGGGAAGAAAGGAAGGAAAGGCATGATCTTTCGTCAGAAGAAAATTAACTATGCTGCATCTAATTTTTAAAACTATATGGGTAAATGTGCTTTGACATGGGTCTCCATTATGTCCTAAAAAATTCCTCATTCTCACAG
Seq C2 exon
AACTGCACTGCATTATGCTTGTGCGCATGGCCATCTGGGAGTGGTGACTCTTCTAATAGAGAGGAACTGCAACGTTAATGCCCGCGATGATGACAAGTGCACGCCTCTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024504-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=75.6)
A:
NA
C2:
PF127962=Ank_2=FE(40.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTGGATACTGCGCGGT
R:
TTAATGAGAGGCGTGCACTTGT
Band lengths:
236-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]