RnoINT0001868 @ rn6
Intron Retention
Gene
ENSRNOG00000024504 | AABR07017236.1
Description
NA
Coordinates
chr15:18920373-18922040:+
Coord C1 exon
chr15:18920373-18920494
Coord A exon
chr15:18920495-18921925
Coord C2 exon
chr15:18921926-18922040
Length
1431 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATA
5' ss Score
4.58
3' ss Seq
AAAATTCCTCATTCTCACAGAAC
3' ss Score
6.74
Exon sequences
Seq C1 exon
ATCACTGGATACTGCGCGGTGGGACAGCTCCACCGGGCTGCGAGTGTGGGCGCTGTAGCTACAGTGGAGCGTTTCCTCACGTTCCGGCTAAACGGTGTCAACGACACAGACAAAAGGAACAG
Seq A exon
GTGATAGAACCTGGGAGTAGGTAGGAGCAGGAAGTGAAGGGGCTCTTGGGGACAAGCGGCCCGGCTTGGGGGTGTGTTGATTATGACAGAGGGAGAGTTTTGCTGTGCGATGGAGGAGCTCTAAATGATCAACTCCCAATGTTTGTTGTGAGAGGAAGGCGGGAAGCAGTAGAGTGTATAGATAGATACACTGTCTAAGGTGTAGAATAAAGGGCAAAGGAAAAATACCCTGACCCTAACTTGACCCCAAACCCAAGTCAAGGGCCAAGAAACAATCGCACCAATCCCTGAGATTGCCACAGAAACCCACCAATCTCCACAAACCCAACCCTGGGATGGATATGGTAGACAAGAATTGACTTTCACAAGTTGTCCTCTAACTACCATATACTCAGTAGCTGGAGCATGCCCGCACACCCACGCCCATTCCTACTTACTATAATGTTTCTTTGTTTCTTTGTTGTCCCCCCCCGCCCCCCCCCGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAACCCCCAACCCCATGTTTCTTTGTTTCTTTTTTTTTTTTTAATTTTTTTTTATTCTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCGTTTCTTTGTTTCTTTGTTTGTTTCTTTCATGTTTATAAGTACACTGTCACTCTCTTCAGACTCACCAGAAGAGGGCAACAGATCCCATTACAGATGGTTGTGACCCAACATGTGGTTGCTGGGAATTGAACTCGGAACCTCTGGAAGAAGTAGTCAGCATTCTTAACCAGTGAGCCATCTCTCCAGCCCCCACATACCATAATCTTTATGTCAGCAGAGTAGATAAAATTCTACTAGTTCACTCCATTGCAATGTTGTACTTGTTAGCAGTCAAATGCTGGGCTGTCAGGTGCTGGAAACGCTTGCACATGCTTTGTACAAATCTGAGTCGGATTGAATTTGAACTACAACACTAGTTGTGGAAGATGGATAGTGTGTTTAATCCCCATCATATGCACAAGGAAATTGAGTTATGGGGCTCATAGGAAGCCCACGAAATACCAGGTAGCTAGCAGGTAACAGATTAGAGTAGGATTCAAATCCAAGCCAAGTTAACTCTACTGGGCTTTCTCCTTTTTACTTAAACAGGCTACCCCAAGAATGGATGTAGCCATGATAGAGCACTAGCCCTGAATGAGGCAGGCCTTGTCTTAAGTCTGGAAGAAGGGAAGAAAGGAAGGAAAGGCATGATCTTTCGTCAGAAGAAAATTAACTATGCTGCATCTAATTTTTAAAACTATATGGGTAAATGTGCTTTGACATGGGTCTCCATTATGTCCTAAAAAATTCCTCATTCTCACAG
Seq C2 exon
AACTGCACTGCATTATGCTTGTGCGCATGGCCATCTGGGAGTGGTGACTCTTCTAATAGAGAGGAACTGCAACGTTAATGCCCGCGATGATGACAAGTGCACGCCTCTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024504:ENSRNOT00000036754:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=75.6)
A:
NA
C2:
PF127962=Ank_2=FE(40.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTGGATACTGCGCGGT
R:
AATGAGAGGCGTGCACTTGTC
Band lengths:
234-1665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]