MmuINT1010940 @ mm10
Intron Retention
Gene
ENSMUSG00000072723 | Gm10044
Description
predicted gene 10044 [Source:MGI Symbol;Acc:MGI:3641749]
Coordinates
chr14:7790018-7791651:-
Coord C1 exon
chr14:7791408-7791651
Coord A exon
chr14:7790133-7791407
Coord C2 exon
chr14:7790018-7790132
Length
1275 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
ACCTTGCTCTTCTTTCACAGAAC
3' ss Score
11.22
Exon sequences
Seq C1 exon
TGAAGAGGATCTTTTGGTCCAGGAGGAGGCGCCCTCGGCCGGGCCACTTCTCCACCAGCCCGTGGGCATCCTGCCTGGGCTTTGGGTGTGCCGGAGGTGAAAGCCAGGCAGTGCCCAGATACCTCGCTGGATACTGCGCGGTGGGACAGCTCCACCGGGCTGCGAGTGTCGGCGCTGTAGCTACAGTGGAGCGTTTCCTCACGTTCCGGGTAAACGGTGTCAACGACCCAGACAAGAAGAACAG
Seq A exon
GTAATAGAATCTAGGAGTAGGTAAGAGCAGGAAGTGAAGGGGCTCTTGGCGACAGGCGGGGCTCGCTCTAAATGATCAACTCCCAAAGTTTTGTTGTGAGAGGAAGGCAGGAAGTAGTAGTTACTGTCTAACGGGTAGAATAAAAGGGCAAAGAAAAAACACCTTGACCCTGACTTGACCCCAAGCTAAAGCCAAGGGCCAAGAAACAGAATCCCACATAAACTCATCAATGCCCACAAACCCCATGCCTGGGACCCGTATGGTAGATGAGAATTAACTTCCACAAGTTGTCCTCTGACTTCCATACACCCAGTAGCCTGAGCATGCGCGCACACCCAGGAACAGCTTCCCCACGCCCACATACCACAACTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCCTTTCTTTTCCTTTCCTTTTCTTTTCTTCTATTTTCCTCTTTCTTTCTTCCTTCCTTTCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTATTCATATATGTGAGTACATTGTCACTCTCTTGAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAGGACCTCTGGAAGAACAGTCAGCACTCTTAACCAGTGAGCCATCTCTCCAGGCCCCACATACCATAATCTTTATGTCTGCAGAGTAGGTAAACTTTTACTATTTCACTTCATTGAAATGCTGTACTTGTTAGTGGTCACACACTGAGCTGTCAGGTGCTGGAAACACTTGCACATGCTTTGTGCAGGTTGGAATTGAATTGAATTAGAACCACAACACTAGCTGTGGAAAAGAGATAGTGTGTTTAATTCCCATCAGATGCATGAGGAAATTGAGTTATGGAGCTCATAGGCAGTCCAAGAAATAATAGGTAACAGATTAGAGTAGGATTCAAATCCAAGCTGAATTAAATCTACTGGGCTTTCTCCTTTTACTTAGACAGGCTACACCAAGCATGGATGTAGCCATGATAGTCCTGAATGGGGCAGGCCTTGTCTTATGTCCTGGGAGAAAGGAAGAAAGAAGAGAAGAAATGATCTAAAGAGAAAAGAAATTTCTCTTTAGAAGAAAATTAGCTATGTTGAATCTAAGTTTTAAAATTATATGGATAAATGTGCTTTGACACAGGTCTCCATTATTTCTGAAAACCTTGCTCTTCTTTCACAG
Seq C2 exon
AACTGCACTGCACTATGCTTGTGCGCATGGCCACCTGGGGGTGGTAACTCTTCTCATAGAGAGGAACTGCAACATTAATGCCTGCGATGACGACAACTGCACGCCTCTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072723:ENSMUST00000081331:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTGGTCCAGGAGGAGGC
R:
AATGAGAGGCGTGCAGTTGTC
Band lengths:
347-1622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types