RnoEX0001871 @ rn6
Exon Skipping
Gene
ENSRNOG00000051880 | AABR07021996.1
Description
NA
Coordinates
chr13:101965953-101972849:+
Coord C1 exon
chr13:101965953-101966080
Coord A exon
chr13:101968368-101968531
Coord C2 exon
chr13:101972700-101972849
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTTTCTTCAAAGCTT
3' ss Score
8.66
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTACATGATGTTCATCACAACCTGGAAACGGCTTGGCCAGAAATCCAAACACTACCCTGACTCTGGGAGCGAAGTCACTGAGGGTTTTCCTGCACGATACTGGCTGTCTGCTTTCTTCTCTCCACAAG
Seq A exon
CTTTTCTTACTGCCGTGCTTCAAGACTATGGAAGGGCCCAAGGAATCTCCATGGATGCCCTCACTTTCACTCACAAAGTAATTTATAATAGTGATGGCAGCCAAGAGGATGACCTCTCCAAATTTCTCCAGAAGAGGCTCAACATAGTCAAGAGAGCTTTCCAG
Seq C2 exon
CAACACCAAGAGCACCATCACGAAGGAGTCTACATTTTTGGTTTGTACATTGAGGGAGCACGATGGGATCCGCAACAGGAAGTGCTGGAAGACGCACTGCCCGCTCAGCTGTGCTGCGAATTCCCTGACATCCACTTCTTGCCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051880_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCACAACCTGGAAACGGC
R:
GATGTCAGGGAATTCGCAGCA
Band lengths:
249-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]