RnoEX0002121 @ rn6
Exon Skipping
Gene
ENSRNOG00000038520 | AABR07028354.1
Description
NA
Coordinates
chr17:66659213-66665224:-
Coord C1 exon
chr17:66665051-66665224
Coord A exon
chr17:66659505-66659602
Coord C2 exon
chr17:66659213-66659319
Length
98 bp
Sequences
Splice sites
3' ss Seq
AACTTCTCCCTAACCTCAAGGTT
3' ss Score
5.49
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
GCAGTACAGATGTGTGAAGAAAACATTGTATCTTTACTCCTTGAACATGGGGCTGACCCAAACATAAAGGATGCAAATGGCAACACAGCTTTGCATTACGCAGTTTATGTGGGCAAACCAGCCATTGCTGCCAATCTGCTACCCTATGGAGCAAACATCGAAGAAAAGACTAAG
Seq A exon
GTTGTGCTTCAGATGGGAGCAACTTACATGACTCCAAAATACCACGCAATAAACTCTGTCGAGGGAGCGAAGCCTCGTGTAACCAGCAGATGTCTCAA
Seq C2 exon
GATGGCTTCAGTCCTCTATTACTGGCCCTCAGAGAAAACCAACTCCTAATGGCAGAATTTTTAATAAGAAGAGGAGCAGATATAAATGTGTCTGATGAGCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038520-'3-8,'3-7,4-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(15.4=20.7)
A:
NO
C2:
PF127962=Ank_2=FE(44.9=100)
Main Inclusion Isoform:
ENSRNOT00000058749fB76
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTGAACATGGGGCTGAC
R:
TGGTTTTCTCTGAGGGCCAGT
Band lengths:
179-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]