RnoEX0002125 @ rn6
Exon Skipping
Gene
ENSRNOG00000038520 | AABR07028354.1
Description
NA
Coordinates
chr17:66659213-66667853:-
Coord C1 exon
chr17:66667582-66667853
Coord A exon
chr17:66665051-66665224
Coord C2 exon
chr17:66659213-66659319
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTTGATACCATACTAACAGGCA
3' ss Score
5.03
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATGTCTTTATTTTCCATTAAAAAGAAGGTCTTCATCTCTGAGACAAAGCCCCAAACACCACTGGGCTTCTGTGATGGCCCTGGAAAGAGAATTGAATGGAAGGATTGCCTGGCATGTAGGTGCGAGACTGCAGACAAATATGATTATGATCTCCTGTTATATGATCCTGACAATGAATTCCATTCTGCAGTGTGTCTGGGGAAAGTAAGTGAAGTGCAGAGTCTCTTAAAGGAGAAAAAATACAATGTAAACGACAGAGATGGTAACAACAG
Seq A exon
GCAGTACAGATGTGTGAAGAAAACATTGTATCTTTACTCCTTGAACATGGGGCTGACCCAAACATAAAGGATGCAAATGGCAACACAGCTTTGCATTACGCAGTTTATGTGGGCAAACCAGCCATTGCTGCCAATCTGCTACCCTATGGAGCAAACATCGAAGAAAAGACTAAG
Seq C2 exon
GATGGCTTCAGTCCTCTATTACTGGCCCTCAGAGAAAACCAACTCCTAATGGCAGAATTTTTAATAAGAAGAGGAGCAGATATAAATGTGTCTGATGAGCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038520_MULTIEX1-3/7=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=34.1)
A:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(15.4=20.7)
C2:
PF127962=Ank_2=FE(44.9=100)
Main Skipping Isoform:
ENSRNOT00000058749fB77
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGGCCCTGGAAAGAGA
R:
TGGTTTTCTCTGAGGGCCAGT
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]