RnoEX0002124 @ rn6
Exon Skipping
Gene
ENSRNOG00000038520 | AABR07028354.1
Description
NA
Coordinates
chr17:66665051-66667853:-
Coord C1 exon
chr17:66667582-66667853
Coord A exon
chr17:66665603-66665717
Coord C2 exon
chr17:66665051-66665224
Length
115 bp
Sequences
Splice sites
3' ss Seq
GACACCTCTCATTTCTACAGAAC
3' ss Score
8.87
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATGTCTTTATTTTCCATTAAAAAGAAGGTCTTCATCTCTGAGACAAAGCCCCAAACACCACTGGGCTTCTGTGATGGCCCTGGAAAGAGAATTGAATGGAAGGATTGCCTGGCATGTAGGTGCGAGACTGCAGACAAATATGATTATGATCTCCTGTTATATGATCCTGACAATGAATTCCATTCTGCAGTGTGTCTGGGGAAAGTAAGTGAAGTGCAGAGTCTCTTAAAGGAGAAAAAATACAATGTAAACGACAGAGATGGTAACAACAG
Seq A exon
AACTGCTTTGCATTTTGCATCCTGTTATGGAAAGGCAGAAATAGTAAATATTCTAATGGAAAATGATTGTGAAATTAATGCGCTTGACAATCAGAAGACAACACCATTGATAAAG
Seq C2 exon
GCAGTACAGATGTGTGAAGAAAACATTGTATCTTTACTCCTTGAACATGGGGCTGACCCAAACATAAAGGATGCAAATGGCAACACAGCTTTGCATTACGCAGTTTATGTGGGCAAACCAGCCATTGCTGCCAATCTGCTACCCTATGGAGCAAACATCGAAGAAAAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038520_MULTIEX1-2/7=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=34.1)
A:
PF127962=Ank_2=FE(40.4=100)
C2:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(15.4=20.7)
Main Skipping Isoform:
ENSRNOT00000058749fB77
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTAGGTGCGAGACTGCAG
R:
TGCAAAGCTGTGTTGCCATTT
Band lengths:
255-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]