RnoEX0002128 @ rn6
Exon Skipping
Gene
ENSRNOG00000038520 | AABR07028354.1
Description
NA
Coordinates
chr17:66642118-66654423:-
Coord C1 exon
chr17:66654362-66654423
Coord A exon
chr17:66650868-66650898
Coord C2 exon
chr17:66642118-66642190
Length
31 bp
Sequences
Splice sites
3' ss Seq
TTTACCTTTTTCTTTAATAGTAT
3' ss Score
9.19
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TGCCCGCACTATTTTGAAACACCAAAATTCAATAATTAAACATATCCGAAGATCCAATCGAG
Seq A exon
TATATGATTCTGATGACCATTCTTCCCACAG
Seq C2 exon
AACTCTCATTGAATCTTTTTCAAGAACTAACTTACTTATACCACGCAGGGATAAACGTCATAGCGGTACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038520_MULTIEX1-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGCACTATTTTGAAACACC
R:
ATGACGTTTATCCCTGCGTGG
Band lengths:
122-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]