RnoEX0002311 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3850018-3853441:+
Coord C1 exon
chr18:3850018-3850158
Coord A exon
chr18:3851302-3851382
Coord C2 exon
chr18:3853280-3853441
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTCTCTGAAACCAGAGC
3' ss Score
7.11
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAAAATGTGGAGGGCCCCCAGTGTCAATTTTGTCGAGAAGGATCATTCTACCTGGACTCCGCCAACCCAGAGGGTTGTACCAGGTGCTTCTGTTTCGGAGTGAATACTGACTGTCGGAGTTCACACAAGCGAAGAGCCAAG
Seq A exon
AGCTTGCCGCTTCTGCTACTCTAAGCAGCCAGCTTGCTCTGGGCCGATCACATCTCTGCTTCTTGAGGCTTGGGATTACAG
Seq C2 exon
TTTGTAGACATGATGGGCTGGCGTCTGGAGACAGCAGATGGAGTTGATGTCCCCGTGTCCTTCAACCCCAGCAGCAACAGCGTGGTTGCTGATCTGCAGGAACTGCCGTCCTCAGTCCACAGTGCATCCTGGGTGGCACCTCCATCCTACCTAGGTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(51.0=53.2)
A:
NO
C2:
PF0005213=Laminin_B=PU(8.1=20.4)
Main Inclusion Isoform:
ENSRNOT00000092846fB94
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTTGTACCAGGTGCTTCT
R:
TTCCTGCAGATCAGCAACCAC
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]