RnoINT0003563 @ rn6
Intron Retention
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3850018-3853441:+
Coord C1 exon
chr18:3850018-3850158
Coord A exon
chr18:3850159-3853279
Coord C2 exon
chr18:3853280-3853441
Length
3121 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
GCCACATTGCCATGCTCTAGTTT
3' ss Score
3.24
Exon sequences
Seq C1 exon
GAAAATGTGGAGGGCCCCCAGTGTCAATTTTGTCGAGAAGGATCATTCTACCTGGACTCCGCCAACCCAGAGGGTTGTACCAGGTGCTTCTGTTTCGGAGTGAATACTGACTGTCGGAGTTCACACAAGCGAAGAGCCAAG
Seq A exon
GTACGTGGAGGTTAGTCTTTGGGTATTGGTCAGTATTGGCAGGGGCTGTGGAATATTGTGTGTATTGATGGTTCACAGTACCTAAGATGGCTTACATCCATCTCCCAGAGTCCTGGGTGAAACTCTCCTTTTTTTTTCTATCCTGAGTTCATCTATGTGACCGGTTGCCTCTGCCCAGCCCCCATGCTTCCGATCGCCTGTCTTCCCCTGGCAAATCTTCACATCTCTCACAGTTTCCCAGAATCCTCTTTCTTCCAGCCAGTGTCCCACCTCCTATTTCCTGCCTCAGCTCATTGGCCATTGGATTTTTTATTGACAGATGATGCTTGTGAGAGATTCTCTCTATACCTCACTGCTTCTTGGCCTCAGCATGCCACAGATATCATCGCAATTGCTTCTCAGATCATCATGTCCTTGATAAGCGCCACATGCTCAGGATGCCTCCTCTCAGCATGCCTTGTCACTGTCGATATTGCTGCGCTTGGTTTCTCCGTAGTATTTAACCCTTTGTAACAAATCATGCCTCTAACTTTAGAAATCATTCTTTCCCTCCTTAATTGGTAGAATGTGAGCTCCTTGACACATACCAGGGCCTAGGACAGGGTTTGGGACATGAGAGATGCTCAGAAAATAGTCATCCGATGATGGAATTTGTTGAATTGTAAAGGATATGATAAAGTATCCAGACAGACATCTGGATAGACAGACCTTCAGGATGAGGGTCCACAAGCACATTAATTCTGTCACCACAAAGTGACATGCTATGTCCTTGAGCCCTCCTATACCTGAGGAGCTCTCCAAGAAATCATTTGTCTTCATAGAGTCCCCGTTACATGAGTATAATCATCATATATAATTATCATTGTCCATTACTAATTAACTGATAATTGACTTATGGGAAGATTAGGCTGAAAGTTCTACTCCTCCACACACCTGCGGCCTTTCTGGTCTCCGGTTCCCATCCTGAGGCTAACCAGGTAGCCTGATAACCAGCATCTCGCAAGCCCACAGAGCAGGTATTTGCACATGTCTAGGTAGTGTGGACATGCTGTGTGCATGTGTAGGCCAGATGTCCATGCTGGTGTCTTCCCTTATGGTGTTTCACCATACATGTTGATGTGAGCTTTCTCTCTCTGAAACCAGAGCTTGCCGCTTCTGCTACTCTAAGCAGCCAGCTTGCTCTGGGCCGATCACATCTCTGCTTCTTGAGGCTTGGGATTACAGGTGAGCCGCCCTGCCCGCCCAGCATTTATATGGGTTCTAGGGATCAAATTCCGATCCTCATCCCTGTGCAGAAAGCACTTTAGTCTCTATGCTTCTCCTCCAGTCCCACAGAATGTGTATCCATGATGGTAATAGCACTTTCTCCACGTTCTCTTTACATTCTTCCTGTTTCACATTCTTTCTCAAATGTCTTATCACATCTTAAGTTTGCTTACTCCGTGTAGTCTGTGTGTGTGTGTGTTCATGAAAGGGTGTATGCATATGCATGCTGAAGACAAAGATTAATGTCAAATATCTTTCTCTATAATCTCCACCTCAGTTTCTGAGCTAGCCCCTCACTGGCCTGGATTTTGCTGAGGTTAGACTGACTGGTACCCTTCTGTCTTCATTTCCCAAGCACTGGGACCACAGGTGTTTATCACCTTTTTATGTGGATTCTTGGAGATCAAACTCAGGTTCCCATGCCTGTGAGACCCATGCTTACCCATGCCTATGAGACCCATGCCTGTGAGACTCATGCTTTACCCATGCCTATGAGACACATGCCTTACCCATGCCCATGAGACCCATGCCTTACCCATGCCCGTGAGACCCATGCCTTACCCATGCCTGTGAGACCCATGCCTTATCCATGCCTGTGAGAGCCATGCCTTACCCATGCCTGTGAGACCCATGCCTGTGAGACTCATGCTTTACCCATGCCTATGAGACCCATGCTTACCCATGACTGTGAGAGCCATGCTTTACCCATGCCTGTGAGAGCCATGCTTTACCCATGCCTGTGAGAGCCATGCTTTACCCATGCCTGTGAGAGCCATGCTTTACCCATGCCTGTGAGAGCCATGCCTTACCCATGACTGTGAGACCCATGCCTTACCCATGCCTGTGAGAGCATGCCTTACCCATGCCTGTGAGAGCATGCCTTACCCATGCCTGTGAGACCCATGCTTACCCATGACTGTGAGAGCCATGCCTGTGAGAGCCATGCTTACCCATGCCTGTGAGACCCATGCCTTACCCATGCCTGTGAGAGCATGCCTTACCCATGCCTGTGAGACCCATGCCTTACCAACTGAGCCATCACTCTAGCCATCTCTGCCGCTTTTTAACTTCATAAAACTAAGACTTTTATCAATTCTATTAGTCCATGAATGAGTAGCAGCATGCATACTGTTTTGTGTGATATTGTTTTATACATTTTACTGCTTCCTGAATGGAGTTGGACTGGTAAGAAGAAAAAATTTAGTTTGTAAATCTGTTCTGTAGCCTCCCTTCTCAGCCCTTGTACAACCAGGAAGCTTTATTCCTAGCCATTCCTCGTCTGGTCTTTGTCCCTCCAAATAGAGCTGGCTTCCGTGGTGACAAACAAGGAAATGTTGTATTCTGGCTACTGTATTCCACAACACATTTAAGAAAATGCTCCTTTTTTAAATGTTGTTCTAAACATTTTTAAAGAACTAAGTTAATTCTTCAACAATTTTATACATGCATGGAATGAGTTCTGATTATTTCTTCCCCTACCCATCCCTTTCTTCCTGTCCCTTTCCCAGACCAAGGTCCCTTGGTTTTGTTTTGTCAACCATTTAGTTTACTAGGGTCATCTGTGTGACCGTTGAATGGTAATTCCCATTGGAGCCTGACTGAGTCACTGGTGGTTACACAGCTAAAGGCAGTGACTCCCTCTTTTCATGAATCTGTCTGTAAGAAATAGTTCATCAGGAATGGCCCCCTGCGTCCCTCCTCTATCCTTCTTTACTTATTGCTTGTGTATGTGTGTCTGTGTGTGCACCACGTGAGTGCAGAAAGGGCTACTAATAGAGATGTTGGCACTGGGCTTGCAGATCGTTGTGAGAGTGATGTAGCCAATCACGCTAAAAGCCACATTGCCATGCTCTAG
Seq C2 exon
TTTGTAGACATGATGGGCTGGCGTCTGGAGACAGCAGATGGAGTTGATGTCCCCGTGTCCTTCAACCCCAGCAGCAACAGCGTGGTTGCTGATCTGCAGGAACTGCCGTCCTCAGTCCACAGTGCATCCTGGGTGGCACCTCCATCCTACCTAGGTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300:ENSRNOT00000092846:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(51.0=53.2)
A:
NA
C2:
PF0005213=Laminin_B=PU(8.1=20.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]