RnoEX0002708 @ rn6
Exon Skipping
Gene
ENSRNOG00000026051 | AABR07044362.1
Description
NA
Coordinates
chr20:3139936-3140666:+
Coord C1 exon
chr20:3139936-3140210
Coord A exon
chr20:3140338-3140454
Coord C2 exon
chr20:3140634-3140666
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTGTACCTGTCCTTCCCAGAGG
3' ss Score
8.1
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AACCCCCAAAGACACATGTGACCCACCACCCCAGTCCTGAAGGTGATGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTCTGATATCACCCTGACCTGGCAGTTGAATGGGGAGGACCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGGACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGAAGAAATACACATGCCATGTGGAGCATGAGGGGCTGCCTGAGCCTCTCACCCTGAGATGGG
Seq A exon
AGGCTCCTCCATCCACTGTCTCCAACACAGCCATGATTGCTGTCCTGGTTGTCCTTGGAGCTGTGACCATCATAGGAGCTGTGGTGGCTGTTGTGAGGAAGAGGAGGAGAAACACAG
Seq C2 exon
GTGGAAAAGGAGGGGACTATGCTCCAGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026051_MULTIEX1-3/6=2-4
Average complexity
S
Mappability confidence:
85%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGTGCTGGGCCCTG
R:
CTGGAGCATAGTCCCCTCCTT
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]