RnoEX0003011 @ rn6
Exon Skipping
Gene
ENSRNOG00000009382 | AABR07052486.1
Description
NA
Coordinates
chr3:57584331-57607695:-
Coord C1 exon
chr3:57607541-57607695
Coord A exon
chr3:57585009-57585115
Coord C2 exon
chr3:57584331-57584422
Length
107 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTTTTTTTCTTTAGAAC
3' ss Score
11.02
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTCCTGTTTGGGATGAATGTGATTTGGAGAAATTGCATTTGCCGTCTGAGGCAAGGGAAGGTGCCACACAGATGTCAGAGCGGTGTCCACCCGGTGGCCCCTCTGGGGTCAAGGATTTTAACTGACCCCACCAAAGTTTTCGAACACAACATGTG
Seq A exon
AACTAAATGTCTTAAAATTTACGTCTTGAGGCTGAGGAGATGGCTCGGTGGGTAACATGCTTACCGTGTAGCTTACCACAGCACCGTAACCTCCGAGCTGGGAGTGT
Seq C2 exon
GGATCACATGCAGTGGTCCAAAGAGGAAGAAGACGAAGCTAGAAAAAAAGTAGAGGAAAACTCAGCCACACGAGTCGCCCCAGAAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009382_MULTIEX1-1/6=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.854
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGTTTGGGATGAATGTGA
R:
TTGCTCTTCTGGGGCGACTC
Band lengths:
246-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]