RnoEX0003012 @ rn6
Exon Skipping
Gene
ENSRNOG00000009382 | AABR07052486.1
Description
NA
Coordinates
chr3:57571981-57607695:-
Coord C1 exon
chr3:57607541-57607695
Coord A exon
chr3:57584331-57584422
Coord C2 exon
chr3:57571981-57572321
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATCTTTCTTTTCTTAACAGGGA
3' ss Score
11.19
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTCCTGTTTGGGATGAATGTGATTTGGAGAAATTGCATTTGCCGTCTGAGGCAAGGGAAGGTGCCACACAGATGTCAGAGCGGTGTCCACCCGGTGGCCCCTCTGGGGTCAAGGATTTTAACTGACCCCACCAAAGTTTTCGAACACAACATGTG
Seq A exon
GGATCACATGCAGTGGTCCAAAGAGGAAGAAGACGAAGCTAGAAAAAAAGTAGAGGAAAACTCAGCCACACGAGTCGCCCCAGAAGAGCAAG
Seq C2 exon
TTAAGTTTGAAAATGCTGCTAACAAATACTGGGACACTTTTTACCAAACCCATAAGAATAAGTTTTTCAAGAATCGTAATTGGCTGTTGAGGGAATTTCCTGAAATTCTTCCCGTTGATCAGAACACTAAAGAGAAACTGGGAGAATCATCCTGGGACCCAGCCAGAAGCAGCATCTCAAGAACGCAAGGAACAGAAACCCACCGACAAGAGACTTTTGTCTCATCAGAACCTGGGAGCAGAGAAAGGTCTGCTTCTAACCCTGACTTGGAAGAATACAGCAGAGGACCCAGGAAGGCAGAGCAGTTTCCTGGTAGCAAGGCTACTTTTCGAATACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009382_MULTIEX1-2/6=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.854 C2=0.576
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0196912=DUF111=PU(27.6=42.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGATGTCAGAGCGGTGTC
R:
TCCCTCAACAGCCAATTACGA
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]