MmuEX0028764 @ mm9
Exon Skipping
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:70819912-70856431:-
Coord C1 exon
chr2:70856277-70856431
Coord A exon
chr2:70831541-70831632
Coord C2 exon
chr2:70819912-70820252
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCCTTAATAGGGA
3' ss Score
11.19
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTCCTGCTTAGGATGAATGTGATTTGGAGAAGTTGCATTTGCCGACTGAGGCAGGGGAAGGTACCACACCGATGCCAGAGTGGCGTCCACCCGGTAGCCCCTCTGGGGTCGAGGATTTTAACTGACCCCGCCAAAGTTTTTGAACACAACATGTG
Seq A exon
GGATCACATGCAGTGGTCTAAAGAAGAAGAAGACGCAGCTAGAAAAAAGGTAGAGGAAAACTCAGCCACACGAGTCGCTCCAGAAGAGCAAG
Seq C2 exon
TTAAGTTTGAAAGTGACGCTAACAAATACTGGGATATATTTTACCAGACCCATAAGAATAAGTTTTTCAAGAATCGTAATTGGCTGTTGAGGGAATTTCCTGAAATCCTTCCTGTTAATCAAAACACTAAAGAGAAAGTGGGAGAATCATCCTGGGATCAAGTCGGAAGCAGCATCTCTAGGACACAAGGAACAGAAACCCATTGTCAAGAGAGTTTTGTCTCGCCAGAACCTGGGAGCAGAGGACGGTCTGCTCCTGACCCCGACTTGGAAGAATACAGCAAAGGACCTGGGAAGACAGAGCCGTTTCCTGGTAGCAATGCCACTTTTCGAATACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975-'3-5,'3-4,4-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.822 C2=0.518
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134891=Methyltransf_23=PU(15.8=26.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGGTAGCCCCTCTG
R:
CAGGAAATTCCCTCAACAGCCA
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: