DreEX6034826 @ danRer10
Exon Skipping
Gene
ENSDARG00000017359 | mettl8
Description
methyltransferase like 8 [Source:ZFIN;Acc:ZDB-GENE-041114-19]
Coordinates
chr9:3548353-3552976:+
Coord C1 exon
chr9:3548353-3548503
Coord A exon
chr9:3549931-3550022
Coord C2 exon
chr9:3552744-3552976
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGAATGTTCATACTCCGCAGGGA
3' ss Score
8.5
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
ATGAGTGTGGAGAGATGAGGGGGCTCGTGAAGCTGACTGCCCGCGCTGTGAGCTTTATTCCCTGCAGGCAGTGCGGTGGAGGAAGACCACCCGCTCCATTAGGAGGAAGAATCCTGTCCAACCCTGATGACGTCTTTAAGCATAACATGTG
Seq A exon
GGATCATGTGCAGTGGACTGAAGAGGAGAGAGAGAAAGCCCGACAGAAGGCAGAAGAAAACTCTGAAGAGAAGATTCCTGTCGAAGAGCAGT
Seq C2 exon
CCAAATATGACAGAGAAGCTCATAAATACTGGGACCAGTTTTACGAGATGCACCAGAACAAATTCTTCAGGAACCGAAATTGGCTCTTCACTGAATTCCCGGAGCTTCTCCCTCCAGACACGGGCGGGATGTTAATGGCGGAGCAGGAGCAAGGCTTAGAGTCAGTGAACAGAGAAAAGCACGATTATAAGGACACATACCCTGGACATCATGCTGCTTTTAGGATACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017359-'1-6,'1-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=0.875 C2=0.218
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134891=Methyltransf_23=PU(32.1=96.2)
Main Skipping Isoform:
ENSDART00000008606fB3835
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAACCCTGATGACGTCT
R:
CTGCTCCGCCATTAACATCCC
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]