GgaEX6042336 @ galGal4
Exon Skipping
Gene
ENSGALG00000009564 | METTL8
Description
methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
Coordinates
chr7:17545515-17552772:+
Coord C1 exon
chr7:17545515-17545673
Coord A exon
chr7:17547184-17547275
Coord C2 exon
chr7:17552752-17552772
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTTTTTTTTTTGTAGGGA
3' ss Score
11.3
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATCTCCGAACAAAATGAATTTCATTACAAGGCTTTCTGCTTTGTGTCTGAGAAAAAAAAGCAATATGCAGCAAAGGTACCAGAGTAGTCGACGGCCAGCTGTTCCACTTGGATCACGGATTTTAACAGACCCTTCTAAAGTTTTTGAGCATAACATGTG
Seq A exon
GGACCATATGCAATGGTCACAGGAAGAGGAGGAGCATGCCAAGGAAAAAGCAGCAGAGAACTCACTTGTGAAAGTCCATTTGGAAGACCAAG
Seq C2 exon
ATAAGTATGAGAGAGAAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564-'6-7,'6-2,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=0.938 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]