GgaEX6042336 @ galGal3
Exon Skipping
Gene
ENSGALG00000009564 | METTL8
Description
NA
Coordinates
chr7:19497872-19505235:+
Coord C1 exon
chr7:19497872-19498010
Coord A exon
chr7:19499525-19499616
Coord C2 exon
chr7:19505093-19505235
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTTTGTAGGGA
3' ss Score
11.1
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TCATTACAAGGCTTTCTGCTTTGTGTCTGAGAAAAAAAAACAATATGCAGCAAAGGTACCAGAGTAGTCGACGGCCAGCTGTTCCACTTGGATCACGGATTTTAACAGACCCTTCTAAAGTTTTTGAGCATAACATGTG
Seq A exon
GGACCATATGCAATGGTCACAGGAAGAGGAGGAGCATGCCAAGGAAAAAGCAGCAGAGAACTCACTTGTGAAAGTCCATTTGGAAGACCAAG
Seq C2 exon
ATAAGTATGAGAGAGAAGCCAGTAAGTATTGGAATGAATTTTACAAGACTCACAAAAATAACTTCTTCAAGGATCGCAATTGGTTGTTTTTGGAATTTCCAGAAATTCTTCCAGAAAAAATGAGAGAACGGTTGAAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.531 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTACCAGAGTAGTCGACGG
R:
ACAACCAATTGCGATCCTTGA
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]