RnoEX0003436 @ rn6
Exon Skipping
Gene
ENSRNOG00000000190 | AABR07058539.1
Description
NA
Coordinates
chr7:122834692-122839093:+
Coord C1 exon
chr7:122834692-122835329
Coord A exon
chr7:122838451-122838542
Coord C2 exon
chr7:122838993-122839093
Length
92 bp
Sequences
Splice sites
3' ss Seq
AACACTGTCTTTGTTTTCAGACA
3' ss Score
9.91
5' ss Seq
TCAGTCAGT
5' ss Score
-1.02
Exon sequences
Seq C1 exon
ATAAACAACTGTCAGAATTGCTAAGGTCTGGTAGTTCCCCCAACCTCAATATGGGAGTTGGTGGCCCAGGCCAAGTTATGGCCAGCCAGGCCCAACAGAATAGCCCTGGATTAAGTTTGATAAATAGCATGGTCAAAAGCCCAATGGCACAGACAGGCTTGACTTCTCCCAATATGGGGATGGGCAGTAGTGGACCAAATCAGGGTCCTACTCAGTCCACAGCAGGTATGATGAACAGCCCAGTGAATCAACCTGCCATGGGAATGAACACAGGGATGAATGCTGGCATGAATCCTGGAATGTTGGCTGCAGGCAATGGACAAGGGATAATGCCCAATCAAGTCATGAATGGTTCAATTGGAGCAGGCCGGGGAAGGCCAAACATGCAGTACCCAAATGCAGGCATGGGCAATGCTGGCAGTTTATTGACTGAGCCACTACAGCAGGGCTCTCCTCAGATGGGAGGACAACCAGGATTGAGAGGCCCCCAGTCACATAAG
Seq A exon
ACACACCAGAAGAGGGCATCTGATCCTATTACAGATGGTTGTGAGCCACCATATGATCACTGGGAATTGAGCTCAGGACCTCTCAAAGATCA
Seq C2 exon
CTGTTTGTATAGACCAGCTGTCAACATGAAGATATGTGGAACTTAACCTAATTATGTCAGACAAGGGTTAGGAAGCAGAGAAGGAGAGATTCGTTGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000190-'5-5,'5-4,6-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000000206fB166
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGCAGGCATGGGCAATG
R:
GCTTCCTAACCCTTGTCTGACA
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]