RnoEX0003439 @ rn6
Exon Skipping
Gene
ENSRNOG00000000190 | AABR07058539.1
Description
NA
Coordinates
chr7:122818975-122844350:+
Coord C1 exon
chr7:122818975-122819267
Coord A exon
chr7:122834692-122835329
Coord C2 exon
chr7:122844174-122844350
Length
638 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTATTTGTTTTTAGATT
3' ss Score
11.18
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACCATTTCTGTTGAGTCCGCATCCCTCTCCGGCCACCGCAACCAGGCGAAGAGAAAAAGGAACTTCCCCCACCCCTCTTGGGTGGCGGCGGAGCTCCGGAGCCCACCCTTAGGAGCGGGGCGGGGACCCCGTTTCGAAGAAGAGATTTCCTCAGGATTCTCGTTTTTTTTCCTCGGTTGTATCTCCGAAAGAATTAAAAATGGCCGAGAATGTGGTGGAACCCGGGCCGCCTTCAGCCAAGCGGCCTAAACTCTCATCTCCGGCCCTCTCGGCGTCCGCCAGCGATGGCACAG
Seq A exon
ATTTTGGTTCACTGTTTGACCTGGAACATGACTTACCAGATGAATTAATCAACTCAACAGAATTGGGACTAACCAATGGTGGTGATATTAGTCAGCTTCAGACAAGTCTTGGCATAGTACAAGATGCAGCCTCCAAACATAAACAACTGTCAGAATTGCTAAGGTCTGGTAGTTCCCCCAACCTCAATATGGGAGTTGGTGGCCCAGGCCAAGTTATGGCCAGCCAGGCCCAACAGAATAGCCCTGGATTAAGTTTGATAAATAGCATGGTCAAAAGCCCAATGGCACAGACAGGCTTGACTTCTCCCAATATGGGGATGGGCAGTAGTGGACCAAATCAGGGTCCTACTCAGTCCACAGCAGGTATGATGAACAGCCCAGTGAATCAACCTGCCATGGGAATGAACACAGGGATGAATGCTGGCATGAATCCTGGAATGTTGGCTGCAGGCAATGGACAAGGGATAATGCCCAATCAAGTCATGAATGGTTCAATTGGAGCAGGCCGGGGAAGGCCAAACATGCAGTACCCAAATGCAGGCATGGGCAATGCTGGCAGTTTATTGACTGAGCCACTACAGCAGGGCTCTCCTCAGATGGGAGGACAACCAGGATTGAGAGGCCCCCAGTCACATAAG
Seq C2 exon
ATGGGAATGATGAGCAATCCCACTCCTTATGGTTCACCATACACTCAGAATTCTGGACAGCAGATTGGAGCAAGTGGCCTTGGTCTCCAAATTCAGACAAAGACTGTTTTACCAAATAACCTTTCTCCATTTGCAATGGACAAAAAAGCAGTTACTGGTGGGGGAATGCCCAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000190_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=0.986 C2=0.968
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGAGTCCGCATCCCTCTC
R:
TTGCTCCAATCTGCTGTCCAG
Band lengths:
358-996
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]