BtaEX0012945 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112802547-112827037:+
Coord C1 exon
chr5:112802547-112802739
Coord A exon
chr5:112821104-112821741
Coord C2 exon
chr5:112826861-112827037
Length
638 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCTCTTTGTTTTTAGATT
3' ss Score
11.89
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTAAGCCCACCCCCGGGATCCGGGCGGGGACCCCGGGCTGAAGAAGAGATTTCCCGAGGATTCTCCTTTTCCTCGCCCGTGTCTCCGAAAGAATTAAAAATGGCCGAGAATGTCGTGGAACCGGGGCCGCCTTCAGCCAAGCGGCCTAAACTCTCATCTCCGGCCCTCTCGGCGTCCGCCAGCGATGGCACAG
Seq A exon
ATTTTGGCTCTCTGTTTGACTTGGAGCACGACTTACCAGATGAATTAATCAACTCTACAGAATTGGGACTAACCAATGGTGGTGATATTAGTCAGCTTCAGACAAGTCTTGGCATAGTACAAGATGCAGCCTCTAAACATAAACAGCTGTCAGAATTGCTACGGTCTGGTAGTTCCCCTAACCTCAATATGGGGGTTGGTGGCCCAGGCCAAGGCATGGCCAGCCAAGCCCAACAGAACAGTCCTGGATTAGGTTTGATAAATAGCATGGTCAAAAGCCCAATGGCCCAGGCAGGCTTGACTTCTCCCAACATGGGGATGGGCACTAGTGGGCCAAATCAGGGCCCCACGCCGTCTGCAACAGGTGTGATGAGCAGTCCCGTCAGTCAGCCTGCCATGGGAATGAACACGGGGATGAACGCTGGCATGAGTCCCGGCATGCTGACTGCCGGCAATGGACAAGGGATGATGCCTAATCAAGTCATGAACGGTTCAATTGGAGCAGGCCGGGGGCGACCGAATATGCAGTACCCGAACCCAGGCATGGGAAGTGCTGGCAACTTAATGACTGAGCCGCTGCAGCAAGGCTCTCCCCAGATGGGGGGACAGACGGGACTGAGAGGCCCCCAGCCTCTCAAG
Seq C2 exon
ATGGGAATGATGAACAACCCTAATCCTTACGGTTCACCATACACTCAGAATTCTGGACAGCAGATGGGAGCCAGTGGCCTTGGTCTCCAGATTCCGACAAAGTCTGTACTACCAAATAGCTTATCTCCATTTGCAATGGACAAAAAGGCTGTTCCTGGTGGAGGAATGCCCAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198-'0-5,'0-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=0.991 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCGGGCTGAAGAAGAG
R:
CATATTGGGCATTCCTCCACCA
Band lengths:
342-980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development